Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03154 ATGAATTATGGACTTGAAAAGGATAAACGgaacttcaattttttgacaaacaagCCCAAATTGGAATTAACTGGACCATTGATGGCAACAGTGATTCTATACCTCTCGAGTGATACTCAAGGGGGTCAAATTGTCTTTCCCGAATCAGTGACCAAGAGTAGCAGCTGGTCAAATTGTAGAAATAGCAGTGACATTCTCCAACCAGCAAAAGGGAATGCGATTCTATTTTTCTCTCGTAACCTAAATACATCTCCCGACAAGAGTAGCTTCCACACCCGATGTCCTGTCCTTAAAGGCGAGATATGGTCTGCTGTTAAATTCTTCTATGCAAGATCAATCAGTGGAGGGAAAGTCTCAACCATGGCAGAGGAATGTACTGATGAGGATGATAGTTGTTCCGCTTGGGCGGCAATAGGAGAATGTCAACGAAACCCTGTCTACATGATTGGAACTCCTGATTATTATGGTTCTATTATTAAGGCGCTTGCTGAAACGTGTGGTCGAAGTCAGCAGCAAATTAACCACCAATTTAAGGATTTAGGTGACTTGGGCTTAGTTGCCCAATCTAGTCGTTTGTCTCAGTCTATGCTGTGGAACTGGAAGCCTGATGCATTGACTGTAACAAAAGTTTTCCACACCTTTCGCTCTATTGCAAagGAATCCGGACAAGACAGTcgagagaagaaaaagaatcatATAAAGTCACTTCTTCTTGCTGCAACTGACTGCGAACCTTTATATCTAATCCGTTTGCTACAGAAAGAGTTGCAGATTGGAGCCAGTGAGCAAACTCTCTTATCTGCATTGGGCCAAGCAGCAGTGTACTCTCAAGAACATTCTGAACCGCCTCCAGAAATTCAGTCGCCTTCAGAAGAGGCCGCAAAGATTGTTAAACAAGTATATTCTGTTCTCCTTGACTATGACAAAATAGTATGTGCACTGCTTACGGATGGTGTATGGCGACTTCCAACGACATGTAATTTTACTCCTGGTGTTCCGGTTGGGCCTATGCTGTCAAATGCAATCACGAGTGTATCCAAAGCTCTAAATAAATTCCAGAATGTAGGGTTTACCTGTGAATACAAATACGATGGAGAACGTGCTCAGATACATTACATGGAGATTGGCTCCGTTGAGATTTACAGTAGAAATGCAGAACGGAACACTAAGAAATTTCCTGATGTTGTTGCTGCAGTTGCAAGGTTAATGAAAAGAACTTTATCGTCGTTTGTTATGGATTGTGAAATTGTTGCATATGATCGTGCAAAACAGAAAATCCTTCCTTTACAGGTGCTTAGTACTCGGGCTCGCAAAAATGTAGCTGCGAGTGACATAAAGGTTGATGTATggatattttcttttgatttgttgTATCTTAATGGCCAAGCACTTTTAAAGGAAAACCTGAAAATCCGTAGAGAGCATCTTTATGCCTCATTTGAGGAGGAATCTGGATTTCTTCAGTTTGCAACGTCAATAACATCAAATAATGCTGAGGAAATAAAAGAGTTTCTCGATGAATCTGTGAATGCAAGTTGTGAGGGATTAATTTTTAAAACGTTAAATGAAAATGCTACGTATGAACCTTCCCAGCGGGATATTGACATGACATGGCCCGATACCAAAGGAAAGAAGACCCACTCCAAAAGCTGTCGTGATCAACTATAA 1668 0.3969 MNYGLEKDKRNFNFLTNKPKLELTGPLMATVILYLSSDTQGGQIVFPESVTKSSSWSNCRNSSDILQPAKGNAILFFSRNLNTSPDKSSFHTRCPVLKGEIWSAVKFFYARSISGGKVSTMAEECTDEDDSCSAWAAIGECQRNPVYMIGTPDYYGSIIKALAETCGRSQQQINHQFKDLGDLGLVAQSSRLSQSMLWNWKPDALTVTKVFHTFRSIAKESGQDSREKKKNHIKSLLLAATDCEPLYLIRLLQKELQIGASEQTLLSALGQAAVYSQEHSEPPPEIQSPSEEAAKIVKQVYSVLLDYDKIVCALLTDGVWRLPTTCNFTPGVPVGPMLSNAITSVSKALNKFQNVGFTCEYKYDGERAQIHYMEIGSVEIYSRNAERNTKKFPDVVAAVARLMKRTLSSFVMDCEIVAYDRAKQKILPLQVLSTRARKNVAASDIKVDVWIFSFDLLYLNGQALLKENLKIRREHLYASFEEESGFLQFATSITSNNAEEIKEFLDESVNASCEGLIFKTLNENATYEPSQRDIDMTWPDTKGKKTHSKSCRDQL 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03154 555 Coils Coil 552 555 - -
Tsu06g03154 555 Pfam ShK domain-like 124 148 IPR003582 -
Tsu06g03154 555 Pfam 2OG-Fe(II) oxygenase superfamily 27 109 IPR044862 -
Tsu06g03154 555 Pfam DNA ligase N terminus 157 269 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Tsu06g03154 555 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 360 368 IPR016059 GO:0003909
Tsu06g03154 555 PANTHER DNA LIGASE 1 157 532 - -
Tsu06g03154 555 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 158 536 IPR000977 GO:0003910|GO:0005524|GO:0071897
Tsu06g03154 555 Gene3D - 155 335 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Tsu06g03154 555 Gene3D q2cbj1_9rhob like domain 8 109 - -
Tsu06g03154 555 MobiDBLite consensus disorder prediction 532 555 - -
Tsu06g03154 555 MobiDBLite consensus disorder prediction 535 555 - -
Tsu06g03154 555 Gene3D DNA ligase/mRNA capping enzyme 336 542 - -
Tsu06g03154 555 ProSiteProfiles ATP-dependent DNA ligase family profile. 442 555 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Tsu06g03154 555 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 157 532 - -
Tsu06g03154 555 Pfam ATP dependent DNA ligase domain 336 533 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Tsu06g03154 555 CDD Adenylation_DNA_ligase_I_Euk 325 532 - -
Tsu06g03154 555 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 152 326 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Tsu06g03154 555 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 328 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03154 Tsu-Chr6 41880008 41886435 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03154 157 532 Core DNA Replication Machinery Family AT1G08130 64.894 2.50e-178 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03154 K10747 - gmx:100783155 536.954