Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03119 ATGGGAAAAACACCATGTTGTGATAAACATGTAGTGAAGAGAGGAGCTTGGAcaagtgaagaagatgaaacatTAGTTGAGTATATTAACAAAAATGGACATGGAAGTTGGAGATCACTTCCAAAACTAGCAGGTCTCCTTCGTTGCGGAAAAAGTTGCCGGCTTCGGTGGATAAATTATCTTCGCCCTGACATTAAGCGCGGACCATTTACTACTGATGAAAAAAACAGAATTATTCAGCTTCATACCATGCTCGGCAACAGGTGGGCTGCTATAGCATCCCAAATTCCGGGACGAACAgacaatgaaataaaaaactacTGGAACACACAACTGAAGAAGCGCGTAACTCAGTCGGGAAATTCACTAGCAACACAACAGCACCACAATCTCAGTTCTGATCATATTGTTGTCAAGCCCGAATCTCCTTCGAAACAACACATGATGCAATGGGGAAATGCCGGAATTGAGGCTGAGGCGAAGTTGTCAATGGAATCATCATTGGTTGATAATCCATTGCCAACAAGTAAAACACATTCTGATTACTTTCTTCAACTTTGGAATTCTGATGTTGGAAAGTCATTTAGAATGATCAAAGGAAAAGAGATAATGAGTCAAAGCACTGTCTCAGAGACATCATCCTCAAAACTGGAGTCATGTTCAAACAATGGTAGCAGTGCCTTGGCACACAAGTCACAAGAAGAACAAGGTAGTGAATATAGACCAAAACTTGAAGATGGCATAGCAGGTTCAGAGTCAGAATATTATGAATTTCTTGATTCTTATGATTCTGCACTAAATCGCCTTCTAGACGAAGAAATAGGATTCTCAGCACAAAGTGAAAGTTTTCTCGATACACTTTTTGGCATATCTGACTAA 879 0.3868 MGKTPCCDKHVVKRGAWTSEEDETLVEYINKNGHGSWRSLPKLAGLLRCGKSCRLRWINYLRPDIKRGPFTTDEKNRIIQLHTMLGNRWAAIASQIPGRTDNEIKNYWNTQLKKRVTQSGNSLATQQHHNLSSDHIVVKPESPSKQHMMQWGNAGIEAEAKLSMESSLVDNPLPTSKTHSDYFLQLWNSDVGKSFRMIKGKEIMSQSTVSETSSSKLESCSNNGSSALAHKSQEEQGSEYRPKLEDGIAGSESEYYEFLDSYDSALNRLLDEEIGFSAQSESFLDTLFGISD 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03119 292 Gene3D - 68 136 - -
Tsu06g03119 292 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu06g03119 292 CDD SANT 69 110 IPR001005 -
Tsu06g03119 292 CDD SANT 16 61 IPR001005 -
Tsu06g03119 292 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu06g03119 292 Gene3D - 14 66 - -
Tsu06g03119 292 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Tsu06g03119 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tsu06g03119 292 MobiDBLite consensus disorder prediction 206 246 - -
Tsu06g03119 292 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Tsu06g03119 292 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu06g03119 292 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 274 - -
Tsu06g03119 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu06g03119 292 MobiDBLite consensus disorder prediction 206 233 - -
Tsu06g03119 292 SMART sant 13 63 IPR001005 -
Tsu06g03119 292 SMART sant 66 114 IPR001005 -
Tsu06g03119 292 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03119 Tsu-Chr6 41371835 41374911 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03119 1 285 MYB Transcription Factor Family AT3G61250 52.542 2.20e-92 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu06g03119 Myb_DNA-binding 5.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03119 K09422 - gmx:100807142 348.591