Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03118 atgGGAATCCAGGTGGcagaaaaaccaaaaccaaaatacAGAAAGGGATTATGGTCCCCTGAAGAAGATAATAAGCTCAGAAATTATATCCTTAAGTATGGTCATAGCTGCTGGAGTTCTGTTCCCATTAAGGCAGCCTTGCAAAGGAATGGAAAAAGTTGCAGACTAAGATGGATTAACTATCTTAGACCAGGATTAAAGAGAGGTGTGCTTAGCAAACATGAGGAAGATACAATCATCACCCTTCACCACATGTTAGGCAACAAGTGGTCTCAAATAGCCCAACAATTACCAGGAAGGACAGACAatgagataaaaaattattggcatTCATATTTGAAAAAGAAAGTGATCAATGCTAAGGAAATAATTGAATCTCATAATCAATTTCAATATGCTAGCTCAAGTTCAGATACAATGGACACTTTATTCTCTACAAAAAAATGTGCAATTCAAGATCCTAACTATATGTTATTAGAAAACATTGATAAATCAACAACTGCAGCAACACACTCTGATCAATCTATTTCTCAGAATTATAGCACTGCCAATGAAGTTTCTCAGAGCTCATTACCAAAACTTTTATTTGCTGAGTGGCTTTCATTGGATCATGTAAATGGTGGAAAATCTTTAAATTCATATGATTCAATGGTCTTGGGAGATGGATttgatcaaaattcaatttttcaagaaaatgttATGCAAATGCAAGAAGGACAATTTGGTGAAGAGTTTCATGATAGTTTAATTCAAAATCTAGAGAATGAGGTTTATTATTCACAGCTTCAAATATCAAATCAAGTGGATGAAAATGAATTGGTGCATTATATGAACAATGATGGAGGGTTTGTATGA 855 0.3193 MGIQVAEKPKPKYRKGLWSPEEDNKLRNYILKYGHSCWSSVPIKAALQRNGKSCRLRWINYLRPGLKRGVLSKHEEDTIITLHHMLGNKWSQIAQQLPGRTDNEIKNYWHSYLKKKVINAKEIIESHNQFQYASSSSDTMDTLFSTKKCAIQDPNYMLLENIDKSTTAATHSDQSISQNYSTANEVSQSSLPKLLFAEWLSLDHVNGGKSLNSYDSMVLGDGFDQNSIFQENVMQMQEGQFGEEFHDSLIQNLENEVYYSQLQISNQVDENELVHYMNNDGGFV 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03118 284 PANTHER MYB DOMAIN PROTEIN 55 1 277 - -
Tsu06g03118 284 CDD SANT 18 62 IPR001005 -
Tsu06g03118 284 Pfam Myb-like DNA-binding domain 72 113 IPR001005 -
Tsu06g03118 284 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Tsu06g03118 284 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Tsu06g03118 284 CDD SANT 72 113 IPR001005 -
Tsu06g03118 284 Gene3D - 71 140 - -
Tsu06g03118 284 Gene3D - 17 67 - -
Tsu06g03118 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Tsu06g03118 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Tsu06g03118 284 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Tsu06g03118 284 SMART sant 14 64 IPR001005 -
Tsu06g03118 284 SMART sant 67 115 IPR001005 -
Tsu06g03118 284 PANTHER MYB TRANSCRIPTION FACTOR 1 277 - -
Tsu06g03118 284 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03118 Tsu-Chr6 41365183 41368877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03118 6 242 MYB Transcription Factor Family AT5G52260 45.935 1.47e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu06g03118 Myb_DNA-binding 6.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03118 K09422 - gmx:100803537 384.415