Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03117 ATGGGTGTCAAGAATTTATGGGACATCCTCGAATCTTGCAAGAAAACGGTTCCTCTTCACAATCTCCAGAACAAAAGGGTGTGTGTGGATTTATCGTGTTGGATGGTTCAGCTTCAGAAAGTGAGTAAATCGCATGGTTGTTTGAAAGAGAAAGTTCATCTTAGAGGACTCTTTCACCGTCTTAGAGCTCTCATTGCTCTTAATTGCactgttgtttttgtttcagATGGATCAATTCCTGCCATTAAATTATCGACTTATAGGCGTCGCTTAAACAATGGAAAGGAGGTAGCCCAAAACGAAACTAACTTACAGAAAGTGACATCATTACGGAGAAACATGGGCTCTGAGTTTTCATGCATGATTAAAGAGGCTAAAGTCTTAGGGATGGCTCTTGGCATCTCTTGTTTGAATGGGATTGAAGAAGCTGAAGCTCAGTGTGCTTTGTTGAACTCTGAATCATTATGTGATGGATGTTTCAGTTCAGATTCAGATATATTTCTCTTTGGTGCAAGGACAGTGTACAGAGATATCTGCCTCGGAGACGGCGGATATGTTGTATGTTATGAGATGGCAGACATTGAGACAAAACTTGGATTTGGACGGAATTCATTGATTGCTCTCTCATTGCTTCTCGGCAGTGACTATTATCCAGGAGTTCATGGTTTAGGTCCGGAGTCAGCTTGTCAGATAGTCAAATCAATCGGTGACAAATTTGTTCTTAAAAAATTTGTGAATGAAGGACTTGGATggttgaaaaaaagaaaagGAGCTGAAAATAATATAGGAAGGGACGATACCGTTGTAGAAGTGATTAATGCTTATTTGAAGCCAAAATGCCACTCAGCAGATTCAGATGTTGTGCTCAGGGCTCTTGCTCAGTATCCATTTGAACGTATTAAACTCCAGCAGATATGCGCTGAATTCTTTGAATGGCCTTCGGAGAGAACAGATGGGTATATCCTTCCCGGTATAGCAGAAAGAGATTTACGACGATTTGCCAATTTGCGATTAACTTCATCTGAACTTGGCTTGAACCTTCCTTTACACGAGATCCCGGTGAAGTGTCCTGTGTCAGAAATTATTAAGAGCCGAAGAGCTCAAGGGCGAGAGTGCTATGAGGTTACTTGGAAAGACATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGTGCCTGTCCGGAGAAGATTTTGGAATACGAGGAGAGAAAAGCACTGCGGAAGAAACAAAATGTTCGAAAAAGTAGACCAAAGAAAAAGGAAACTACGCCTTCTTTGGCTGAGCTTGATCTAACACTTCAGAATCTGTTGTTAGACAATAACTTGGAAGATGAAACCAACAACAATGTCACTGAATCTGATTCTTCAGCAAGGATATTAGGAGAGATAACTGCTATGGCTGAATCCGATCTAAACACAGAAAACTTGATGCTGTCACGCGATGACATAGAAAATAATGAATGGATTCATAATATCAGCAACGTATCAAGGAATGAGGCCGTTTCAAGTATAGACAAAAATGTGGTCATAGATCTTTTGAGCCCTACTCCAATTAAGCCATCAAACAATTCTTCGAAATTTCATCGATCAAGTAACCAAAATATTGAAGTGATTAATTTAAGTGATTCAGAAAATGAGGTATCACCTGAACACAAGGAGAAAGCTAAAGAGCTGAGATTGTTCATAGCGAGTATTAGAAACGAAATCCAATGA 1725 0.3913 MGVKNLWDILESCKKTVPLHNLQNKRVCVDLSCWMVQLQKVSKSHGCLKEKVHLRGLFHRLRALIALNCTVVFVSDGSIPAIKLSTYRRRLNNGKEVAQNETNLQKVTSLRRNMGSEFSCMIKEAKVLGMALGISCLNGIEEAEAQCALLNSESLCDGCFSSDSDIFLFGARTVYRDICLGDGGYVVCYEMADIETKLGFGRNSLIALSLLLGSDYYPGVHGLGPESACQIVKSIGDKFVLKKFVNEGLGWLKKRKGAENNIGRDDTVVEVINAYLKPKCHSADSDVVLRALAQYPFERIKLQQICAEFFEWPSERTDGYILPGIAERDLRRFANLRLTSSELGLNLPLHEIPVKCPVSEIIKSRRAQGRECYEVTWKDMDGLETSIVPADLIESACPEKILEYEERKALRKKQNVRKSRPKKKETTPSLAELDLTLQNLLLDNNLEDETNNNVTESDSSARILGEITAMAESDLNTENLMLSRDDIENNEWIHNISNVSRNEAVSSIDKNVVIDLLSPTPIKPSNNSSKFHRSSNQNIEVINLSDSENEVSPEHKEKAKELRLFIASIRNEIQ 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03117 574 CDD H3TH_XPG-like 203 246 - -
Tsu06g03117 574 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 200 336 IPR036279 -
Tsu06g03117 574 PANTHER FLAP ENDONUCLEASE GEN HOMOLOG 1 1 469 - -
Tsu06g03117 574 SMART chromo_7 355 409 IPR000953 -
Tsu06g03117 574 CDD PIN_GEN1 2 198 - -
Tsu06g03117 574 SMART xpgineu 130 200 IPR006086 GO:0004518
Tsu06g03117 574 SMART xpgn3 1 97 IPR006085 GO:0004518
Tsu06g03117 574 ProSiteProfiles Chromo and chromo shadow domain profile. 356 416 IPR000953 -
Tsu06g03117 574 Gene3D - 355 423 - -
Tsu06g03117 574 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 469 IPR006084 -
Tsu06g03117 574 Gene3D - 201 260 - -
Tsu06g03117 574 Pfam XPG N-terminal domain 1 92 IPR006085 GO:0004518
Tsu06g03117 574 SUPERFAMILY Chromo domain-like 357 412 IPR016197 -
Tsu06g03117 574 Gene3D - 2 199 - -
Tsu06g03117 574 SUPERFAMILY PIN domain-like 2 215 IPR029060 -
Tsu06g03117 574 Pfam XPG I-region 133 215 IPR006086 GO:0004518
Tsu06g03117 574 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Tsu06g03117 574 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Tsu06g03117 574 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 129 146 IPR006084 -
Tsu06g03117 574 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 150 170 IPR006084 -
Tsu06g03117 574 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 205 220 IPR006084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03117 Tsu-Chr6 41342132 41348235 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03117 1 236 Core DNA Replication Machinery Family AT5G26680 25.194 2.12e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03117 K15338 - gmx:100806919 884.789