Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03112 ATGCTTAATTTTCACCTCAAACACCTCAACTTTACTTCCCTCACAACTCTAATTCCATTCCTCATCCTTCTATTCATAAACCATGTTGAATCACAAGGTTCCTCCATGCAACCGGTTCCGACCGACATCTCTCAACATAGATGGCAACCTTCCCTTGCAATCACAGGTGGTGCCTTACTTTGTCTACTTCTATTCTTAGGAATCATCTTTTGTTACGTCCGAAATTGCGTCGAATCACGCGTCATAATCAGAGATTGTCCATGTTCATGTTCACAAGGTATCAACAAAGAACTTCTCAATACTTTCCCTATCCTCTTTTTCTCAACAATCAAAGACCTTAAAACAGATAAAGGACCATTGGAATGTGCAGTTTGCTTAACAGATTTCAAAGAAAATGATACTTTAAGATTACTACCTAAATGCAACCATGTTTTTCACCCTCAATGCATTGATTCATGGCTAGCTTCACATGTCACATGTCCGGTTTGTCGCGCAAATCTTAACCAAGATTCTTGTCAAGTTGCAATGACAATTCCAACTCATTTCAACAATGACCAAACGTGTGAAGAAAGTCCCGAAACCGTGCCCGAAATCACTCTAAAAACCGTACCCGAAATCACTCAAAATAACGATTCCAatgaccaaaaccaaaacccgaaCCAAATTGGCGATGAAATGAACAAAGAAGAAAGTATCAATTGTGATGATGGGcataaatcaaaattgaaactttCACGGTCAAATTCAACCGGACATTCATTGGTTGAACAAGTGACATGTATGGAGAGATACACACTAATGTTACCAGAGGATGTTAGAAGGTACATTTTGGTTAACCATAGAAAAAGTTTTCAACTTTCTATGAACAACAACATGGTTAAAGGGTTATGTTGGAGTGATAGTGAAGGAAGCAGTGTAGGGAAGAGAATCAATAGTGATGCAAAGGTAGAGAAATGGGTTTTGTGTACAAGACATGGTTGA 981 0.3721 MLNFHLKHLNFTSLTTLIPFLILLFINHVESQGSSMQPVPTDISQHRWQPSLAITGGALLCLLLFLGIIFCYVRNCVESRVIIRDCPCSCSQGINKELLNTFPILFFSTIKDLKTDKGPLECAVCLTDFKENDTLRLLPKCNHVFHPQCIDSWLASHVTCPVCRANLNQDSCQVAMTIPTHFNNDQTCEESPETVPEITLKTVPEITQNNDSNDQNQNPNQIGDEMNKEESINCDDGHKSKLKLSRSNSTGHSLVEQVTCMERYTLMLPEDVRRYILVNHRKSFQLSMNNNMVKGLCWSDSEGSSVGKRINSDAKVEKWVLCTRHG 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03112 326 MobiDBLite consensus disorder prediction 205 227 - -
Tsu06g03112 326 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 221 - -
Tsu06g03112 326 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 226 299 - -
Tsu06g03112 326 SUPERFAMILY RING/U-box 121 170 - -
Tsu06g03112 326 SMART ring_2 122 163 IPR001841 -
Tsu06g03112 326 PANTHER RING FINGER DOMAIN-CONTAINING 1 221 - -
Tsu06g03112 326 PANTHER RING FINGER DOMAIN-CONTAINING 226 299 - -
Tsu06g03112 326 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Tsu06g03112 326 MobiDBLite consensus disorder prediction 205 245 - -
Tsu06g03112 326 MobiDBLite consensus disorder prediction 228 243 - -
Tsu06g03112 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 174 IPR013083 -
Tsu06g03112 326 Pfam Ring finger domain 121 164 IPR001841 -
Tsu06g03112 326 CDD RING-H2_PA-TM-RING 121 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03112 Tsu-Chr6 41202392 41203957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03112 8 321 Rapid Response to Elicitors AT3G05200 32.530 2.04e-53 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03112 K10664 - gmx:100782532 286.574