Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03102 ATGGCTCCGCCACCACCTCCGGTGGAAAACAACGCCGAATCCACCACAACCGTTACAACCACCCCTATCTTAGAGTCTCAGAGATCTATTCCTACACCGTTTCTCACCAAAACCTATAACCTCGTTGAAGATAAATCCATAGACGATGTTATCTCATGGAATGAAGATGGATCCACCTTCATCGTTTGGAATCCTACCGTTTTCGCTAGCAATTTGCTTCCTAAACATTTCAAACACAATAATTTCTCCAGCTTCGTTCGTCAACTTAATACTTATGGATTTAGAAAAGTAGTACCTGATCGGTGGGAATTTTCAAACGATTGTTTCAAAAGAGGAGAGAAACGGCTTTTATGCGAGATTCAACGGCGGAAGATCTGTTCTCCGGCGGTTTCACCGTCGCCGGCGTCTGTTTCTGTTTCTCCTGTTGCAACGGTGGAAACAACTACAACTGCGACAGTTGCGTTTCCTTCACCGATGCCGATTACTGTTATACCGATGGCGATGCCGATGATTTCACCGTCGAACTCCGGTGAAGAACAAGTGATATCATCGAGTTCGTCTCCGCCGCGTGCACCAGCGGAGCTTCTCGATGAGAACGAAAGATTAAGAAAAGAGAACGTTCTGTTGAATAAGGAACTTGCTGAGATGAGATTGCTTTGTAACAATATATACACTCTCATGTCAAGTTATGCAAACAACAGCAGAGAATCAGGTAATAATCAATCGGACGGTGGAGCGCAAGGAAGTAGAGAATCCGGTATGACGGCGGTGAAGCCGTTGGATTTGTTACCGGCGGAGGTAAAACGGAGCTCCGGCGTTGAAATGAATCCAAAGCTATTCGGTGTTACTATTGGAACGAAGCGAAATAGAGAAAACGGTTGTGAAAATGGTGAAAGAGGAGAAGAAGATACACTGTTACGGCTACATCAACCAGTTACTACGGACGTGAAATCTGAGCCGTTGGATTATCAGGAACAACGTGATAATCATGATGAAACGTTGTGGTTGAATCAGTGTCGTAGAAAGAATCAGAGTTTATcGTATGATTCTGTGGACTGGGATTATCTTGATGTGGTTATAGGGAGGATATCATTTCCGACTTTGTGGAGGAAGTGGATCAAGGAGTGTGTCTGTACTGTCACCGGGTCGGTTTTAGTCAATGGTAGCCCAACTGATGCTTTTTCGTTGGAGAGGGGGTTAAGACAAGGGGATCCGCTTTCCCCTTTCCTTTTCTTGTTGGCTGCTGAAGGTCTGAATGTGTTGATGAAGGCGTTGGTTGCGAACAATTTATTCACAGGCTATAGTGTGGGTGGGGTAGGGAGTGAGTGGTTTAGGGAGAGTGTTGTGAAGAGGGTGGGTAATGGTGCAGAGCATTTCTTTTGGACAGATCCCTGGTTGGGTGGCCGTCCTTTGGGTGAGAGGTTTGGTCGGTTGTTTGACTTGGCTGAGAACAAGTCTTGTTCGGTAGCTGAGATGTTTTCTCTGGGTTGGGAGGAAGGGGGAGAGGCGTGGGCGTGGCGGAGACAGTTGTGGGCATgggaggaggaggagatgttAAGGGAGTGTCAAACCTTACTTTTGAACTTTTCTTTTCAGGTCCAGACTTCTGATTATTGGCAATGGAAGCCCGACCTTGACTCAGGCTACTCAGTCTGTGGTGCCTACCGGTTATTGACTTCACAGGATTTAGGGACGTTAAATGAAGCTGAGACTCTAATATGA 1722 0.4559 MAPPPPPVENNAESTTTVTTTPILESQRSIPTPFLTKTYNLVEDKSIDDVISWNEDGSTFIVWNPTVFASNLLPKHFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNDCFKRGEKRLLCEIQRRKICSPAVSPSPASVSVSPVATVETTTTATVAFPSPMPITVIPMAMPMISPSNSGEEQVISSSSSPPRAPAELLDENERLRKENVLLNKELAEMRLLCNNIYTLMSSYANNSRESGNNQSDGGAQGSRESGMTAVKPLDLLPAEVKRSSGVEMNPKLFGVTIGTKRNRENGCENGERGEEDTLLRLHQPVTTDVKSEPLDYQEQRDNHDETLWLNQCRRKNQSLSYDSVDWDYLDVVIGRISFPTLWRKWIKECVCTVTGSVLVNGSPTDAFSLERGLRQGDPLSPFLFLLAAEGLNVLMKALVANNLFTGYSVGGVGSEWFRESVVKRVGNGAEHFFWTDPWLGGRPLGERFGRLFDLAENKSCSVAEMFSLGWEEGGEAWAWRRQLWAWEEEEMLRECQTLLLNFSFQVQTSDYWQWKPDLDSGYSVCGAYRLLTSQDLGTLNEAETLI 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03102 573 Pfam HSF-type DNA-binding 34 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu06g03102 573 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 12 332 - -
Tsu06g03102 573 PRINTS Heat shock factor (HSF) domain signature 34 57 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu06g03102 573 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu06g03102 573 PRINTS Heat shock factor (HSF) domain signature 85 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu06g03102 573 SMART hsfneu3 30 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu06g03102 573 MobiDBLite consensus disorder prediction 172 198 - -
Tsu06g03102 573 MobiDBLite consensus disorder prediction 173 190 - -
Tsu06g03102 573 Coils Coil 199 219 - -
Tsu06g03102 573 Gene3D - 26 124 IPR036388 -
Tsu06g03102 573 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 348 418 IPR000477 -
Tsu06g03102 573 ProSitePatterns HSF-type DNA-binding domain signature. 73 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu06g03102 573 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 332 IPR027725 -
Tsu06g03102 573 SUPERFAMILY "Winged helix" DNA-binding domain 31 123 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03102 Tsu-Chr6 41037227 41044740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03102 26 346 HSF AT5G62020 48.824 2.99e-84 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Tsu06g03102 HSF_DNA-bind 7.1e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03102 K09419 - gmx:100812267 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g03102 06 41037227 41044740 Tsu01g04455 01 52222912 52224174 PCT