Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03095 ATGGAAGCAAATGGTGAAATGGGactgattggagaaaatttTGATTCTGGTTTGATGGGTAGGATGAGggatgatgattttgatagCAGGTCTGGAAGTGAAAATTTTGATGCTTCTGGTGATGAATTTGATGCTGGTGATGATCAACAACAGAataagaggaagaagaaatatCATAGGCACACTCCTCAACAAATTCAAGAGCTCGAATCTTTCTTCAAGGAGTGTCCTCATCCTGATGAGAAGCAACGAGCTGATCTTAGTAGGAAGCTTGGCTTGGAGAACAAGCAAGTAAAATTCTGGTTTCAGAACCGGCGAACTCAAATGAAgACACAATTGGAACGCCATGAGAACATGATTCTTAGGCAAGAAAACGAAAAGCTTCGAGCTGAGAACAGTGTGATGAAGGAAGCTATGTCAAATCCAATATGTAGCAACTGTGGCGGCCCGGCAATTCCTGGACAAGTTTCAATGGAGGAACACCAGATTAGAATTGAGAATGCTCGTTTGAAGGAGGAATTGGCCCGAGTGAATACCTTGTCCAGCAAGTTCCTCGGCCGGCCAGTCTCGGCATTGAGTGCAATGTCTATGCAGAATCCGAATTTAGGTCTTGAATATGGTATGGGAAGGAACGGAGTTGTTGGTCCGAGCAATTTCAACATGTCGCTGCCAATGGGATTTGATATGGGAAATGGAGTTATGGGAGCTCCACCACCAAATTCTGTAATGCAATCACCGATGGGAATGATCGGAAATGATGCCCAGCAGGAGAGATCTATGCTTATCGAACTCGCATTAGCTGCTATGAATGAGCTAATCAAAATGTCTGAACCTGACTCCCACCTCTGGATTAAGAGTCCAGACAGCGGGAAGGACGTGCTTAACCATGATGAATACGCAAGGATCGGTTCTCCTTTTAACAGTCCGAAACCAAATGGTTTTATAACTGAAGCTACAAGAGAAACTGGGCTGTTATACACCAACAGTGCGGCTCTCGTGGAAACATTCCTCGATGCGGATCGGTGGTCGGAGATGTTTCCATGTATGATTGCTCAAGCTGCAACCTTGGATGTATTATCTACTGGAATGGGTGGAAGCAGAAATGGATCTATGCAAGTGATGCATGCAGAGATTCAATTACCTTCTCCATTTGTTCCAGTTCGACAATATAGTTTCCTTAGGTTTTGCAAGCAGCATGCCGAAGGTGTTTGGGTCGTGGCGGATGTTTCAGTCGACCTTGGTCGTAATGGTCCCAATGGGAATTCGTACATGAGCAGTAAGAAGCTTCCATCTGGCTGTATTTTGCAGGACTTGCCCAATGGTTTGTGCAAGATTACCTGGGTGGATCATTCTCAATATGATGAGACTGCTGTCCACCAAACCTGTCGTCAATTGGTTAACTCCGGCTTCGCATTTGGTGCTCATCGATGGGTTGCAACTCTCCAGAGGCACTGTGAAGCCCTTGCTATCCTCATGTCTTCCGTACCAGCTGATGACCCTTCAGCCATAACCCCATCTGCTAAGAGAAGCATGACAAAGCTTGCGCAGCGGATGTCCGATTACTTCTGGTCTGGAGTTTGTCCTTCGTCGGCTTGCAAGTGGGACATCCTTCACATTACTAACATGGGCAACAGTGACATGAGAATCATGTCACGAAAAATTCCAGATGCCTCTGGTGAAAATCCTAGCATTGTGCTAAGTGCTGCAACTTCTGTTTGGATGCCGGTGTCGCGGCAAAGGGTGTTTGATATCCTCCGTGATGCACAACTGAGAGGTGAGTGGGATATTTTGTCCAATGGTGGATCAATGCAGGAGATGGTCCACATTGCTACAGGACAAGTAGCTGGAAATTCCGTTTCTATCCTTCGTGCTAATAATGCTGCAAATGGAAACGAGGGCAACGTGCTATATCTGCAAGATTCATGGACCGATAGTTCTGGCTCGATGGTTGTGTACTCTCCCATCAACATGCAATCCTTGAGCTTAGTGATGAGTGGTGGAGATTCTTCATGTGTTGCTCTTTTGCCTTCCGGCTTTTCAATTCTTCCGGATGGTCATTCAAGTAACAACAGCATTGTCGGAACTTCAAGTGATGGTAGCAGCAGCAGTGGCAACGACAATGACAATGGTGGATGCTTGCTCACAGTTGGATTACAGATGGTGCTGTCCAACCTTCAATCAAGTAAGCTTACAACTGAATCGGTTGATACCGTTAATGACCTCATTGCAAACACCGTTCAGAAGGTCAAAGACGCTCTTGGAGTGGcatga 2271 0.4487 MEANGEMGLIGENFDSGLMGRMRDDDFDSRSGSENFDASGDEFDAGDDQQQNKRKKKYHRHTPQQIQELESFFKECPHPDEKQRADLSRKLGLENKQVKFWFQNRRTQMKTQLERHENMILRQENEKLRAENSVMKEAMSNPICSNCGGPAIPGQVSMEEHQIRIENARLKEELARVNTLSSKFLGRPVSALSAMSMQNPNLGLEYGMGRNGVVGPSNFNMSLPMGFDMGNGVMGAPPPNSVMQSPMGMIGNDAQQERSMLIELALAAMNELIKMSEPDSHLWIKSPDSGKDVLNHDEYARIGSPFNSPKPNGFITEATRETGLLYTNSAALVETFLDADRWSEMFPCMIAQAATLDVLSTGMGGSRNGSMQVMHAEIQLPSPFVPVRQYSFLRFCKQHAEGVWVVADVSVDLGRNGPNGNSYMSSKKLPSGCILQDLPNGLCKITWVDHSQYDETAVHQTCRQLVNSGFAFGAHRWVATLQRHCEALAILMSSVPADDPSAITPSAKRSMTKLAQRMSDYFWSGVCPSSACKWDILHITNMGNSDMRIMSRKIPDASGENPSIVLSAATSVWMPVSRQRVFDILRDAQLRGEWDILSNGGSMQEMVHIATGQVAGNSVSILRANNAANGNEGNVLYLQDSWTDSSGSMVVYSPINMQSLSLVMSGGDSSCVALLPSGFSILPDGHSSNNSIVGTSSDGSSSSGNDNDNGGCLLTVGLQMVLSNLQSSKLTTESVDTVNDLIANTVQKVKDALGVA 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03095 756 Coils Coil 106 141 - -
Tsu06g03095 756 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Tsu06g03095 756 Pfam START domain 263 486 IPR002913 GO:0008289
Tsu06g03095 756 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 5 754 IPR042160 -
Tsu06g03095 756 CDD START_ArGLABRA2_like 258 486 - -
Tsu06g03095 756 CDD homeodomain 55 112 IPR001356 GO:0003677
Tsu06g03095 756 SUPERFAMILY Homeodomain-like 40 112 IPR009057 -
Tsu06g03095 756 MobiDBLite consensus disorder prediction 1 63 - -
Tsu06g03095 756 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 5 754 - -
Tsu06g03095 756 Gene3D - 263 489 IPR023393 -
Tsu06g03095 756 SMART HOX_1 54 116 IPR001356 GO:0003677
Tsu06g03095 756 ProSiteProfiles START domain profile. 254 490 IPR002913 GO:0008289
Tsu06g03095 756 SUPERFAMILY Bet v1-like 257 488 - -
Tsu06g03095 756 SUPERFAMILY Bet v1-like 505 689 - -
Tsu06g03095 756 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Tsu06g03095 756 MobiDBLite consensus disorder prediction 18 37 - -
Tsu06g03095 756 Gene3D - 43 128 - -
Tsu06g03095 756 SMART START_1 263 487 IPR002913 GO:0008289
Tsu06g03095 756 Pfam Homeodomain 55 110 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03095 Tsu-Chr6 40795084 40800464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03095 1 753 Homeobox Transcription Factor Family AT3G61150 51.376 0.0 757
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu06g03095 START 9.8e-46 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03095 K09338 - gmx:100820113 984.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04458 01 52260794 52266287 Tsu06g03095 06 40795084 40800464 ECH
Tsu05g01224 05 10919133 10925936 Tsu06g03095 06 40795084 40800464 ECH
Tsu06g03095 06 40795084 40800464 Tsu06g03095 06 40795084 40800464 ECH