Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03093 ATGAACTTTCTCCGGCGACTCTTCGGCGGTAAAAAACACCGCAATCCACAATCAGAACCCACCGcaaaaaaagacaaaagaagCTGGAGTTTCGCAAAGAACAACACAAGAGACAAACTAAACTCACACTCATTACATAACAACAAAAATTCTTCTGacccttcttcttctcctttcgCCGGAAATTACGATGCCAATAAACATGCCATTGCTGTTGCTGCTGCTACTGCTGCCGTTGCTGAGGCCGCACTTGCTGCTGCTCATGCTGCTGCTGAGGTTGTTAGACTGACTAGTAACACTGGAGCTGGAAAAAATGCAACTCCGTTGCATGACCGGCGACGGTTGCAGGAGGAAATTGATGCTGCCATGAAAATACAGTCGGCGTTCAGAGGTTACTTGGCAAGGAGGGCATTAAGAGCACTTAAAGCATTGGTGAAGTTGCAAGCATTGGTGAGAGGTCACATTGTAAGAAAACAAACGGCTGATATGCTAAGACGAATGCAAACATTGGTCCGACTTCAGTCTCGAGCACGTGCAAGTCGTGTGCACATTTCTGATAATAATACGCACTCTTTCAAGTCTTCACTTTCTCATTACCCTGTCCCTGATGATTACGAGCACCCGCTTCGTGTCTATAGTACAAAATTTGACGGATCTTCCATCCTCAAGAGATGTAGTTCCAATGCAAATTTTAGAGACATGAACTTAGAACGAGTCCAGTTTGGTTCGAATTGGTTAGACGGTTGGATGGAAGAAAACTCATGGAGCCAAACTGGCGACGCTTCATCGAAAAAAGCACAATGTGATGATGAAAAGAGTGACAAAATTCTTGAAATAGATACATGGAAGCCAAATTTGAACTCACACCATAGTACTAGCACATCTTTTCAACATCATTATTCATATTGTGATTACAATAGTGAGAGTTTTATGGTACACGAGTCACCGTCGAAACGTTTATCTAAACCTCACAATCCAAGTCTCTCTTCTATGAAACATCAGAAAGGAAAAGAAGAAGTAGCTTCTTCACGAACAGCCGAGAGTAGTCCGCAGGCATTTTCGGCTTCATCGAGAATCGAAAGTGTTTCAAGGAGAGGTCCTTTTACACCTACTAAAAGTGAGTCTTCATGGGGTTTTTTCAATGGTTACTCTGGCTATCCTAGTTATATGGCAAATACTCAATCTTCTAGGGCTAAGGTTAGGTCACAAAGTGCTCCAAGACAAAGGCTAGAGTTTGAGAGATGTGGTTCAACTACTAGGTCTATTCAAGGTCTTTGGGAATCAGGGTCTAATTCAGATAAGGATTTTGATTTTAAGACCAAGGTTTATCCAACCACAAATGGCTTGAACAGAATAGGGAGCACAAATTTAAGGTGA 1377 0.4132 MNFLRRLFGGKKHRNPQSEPTAKKDKRSWSFAKNNTRDKLNSHSLHNNKNSSDPSSSPFAGNYDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSNTGAGKNATPLHDRRRLQEEIDAAMKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQTADMLRRMQTLVRLQSRARASRVHISDNNTHSFKSSLSHYPVPDDYEHPLRVYSTKFDGSSILKRCSSNANFRDMNLERVQFGSNWLDGWMEENSWSQTGDASSKKAQCDDEKSDKILEIDTWKPNLNSHHSTSTSFQHHYSYCDYNSESFMVHESPSKRLSKPHNPSLSSMKHQKGKEEVASSRTAESSPQAFSASSRIESVSRRGPFTPTKSESSWGFFNGYSGYPSYMANTQSSRAKVRSQSAPRQRLEFERCGSTTRSIQGLWESGSNSDKDFDFKTKVYPTTNGLNRIGSTNLR 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03093 458 Gene3D - 118 159 - -
Tsu06g03093 458 ProSiteProfiles IQ motif profile. 118 146 IPR000048 GO:0005515
Tsu06g03093 458 PANTHER IQ-DOMAIN 5-RELATED 1 456 - -
Tsu06g03093 458 MobiDBLite consensus disorder prediction 45 60 - -
Tsu06g03093 458 MobiDBLite consensus disorder prediction 1 60 - -
Tsu06g03093 458 MobiDBLite consensus disorder prediction 343 367 - -
Tsu06g03093 458 Pfam IQ calmodulin-binding motif 142 159 IPR000048 GO:0005515
Tsu06g03093 458 Pfam IQ calmodulin-binding motif 120 139 IPR000048 GO:0005515
Tsu06g03093 458 SMART iq_5 117 139 IPR000048 GO:0005515
Tsu06g03093 458 SMART iq_5 140 161 IPR000048 GO:0005515
Tsu06g03093 458 MobiDBLite consensus disorder prediction 314 367 - -
Tsu06g03093 458 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 163 IPR027417 -
Tsu06g03093 458 MobiDBLite consensus disorder prediction 12 44 - -
Tsu06g03093 458 PANTHER CALMODULIN-BINDING PROTEIN 1 456 - -
Tsu06g03093 458 ProSiteProfiles IQ motif profile. 142 169 IPR000048 GO:0005515
Tsu06g03093 458 Pfam Protein of unknown function (DUF4005) 349 411 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03093 Tsu-Chr6 40717933 40725248 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03093 1 426 IQD Protein Family AT5G62070 45.125 1.59e-58 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03093 - - gmx:100785181 531.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g03093 06 40717933 40725248 Tsu06g03093 06 40717933 40725248 ECH