Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03090 ATGGGAGATAGAGCTATGGAAACTGCACCAAATTCTGAAATGATGGGAAATGATTCTGAGATGAAGGGATCTAAGCTAATACTGATAGATCTTGCATCAGCTGCTATGGATGAGCTGATCAAGATGGCTGAACCAGACTCCCATCTCTGGATCAAGAGTCCGGAGAGTGGGAATGAAGTGCTTAACCACTACGAGTACGAAAGGATTTGTTCTCCTTTTAACACTCCGAAACTAAATGGTTTTGTAACTGAAGCTACAAGAGAAACTGTGCTGTTATGCACCAACGTTGATGCTCTTGTCGAAGCATTTCTTGATGCGGATCGGTGGGCGGAGATGTTTCCGTGTATGATTGCTGAAGCTGAAACATTAGAAATATTATCTTATGGAATTGATGGAACCAGAAATGGATTTATGCAACTGATGCATGCTGAGATTCAATTGCCTACTCCATTAGTACCTGTTCGAGAATATAGTTTCATCAGGTATTGCAAGCAGCATGCTGAAGGTAAGTGGGTTGTGCTTGATGTTTCGATCGACTTTGATCGTAATGGTCCCAACCGGAACCCTAACATGAGTTGTAAGAGGCTTCCGTCTGGTTGTATTTTGGAGGATATGCCTGATGGTTTGTCCAAGATTACTTGGGTGGATCATTCTCAATATGATGAGTGTGCTTTCCACCAAACCTGTCGTCAATTGGTTAACTCCGGCTTCGCATTTGGTGCTCATCGATGGGTTGCAACTCTCCAGAGGCACTGTGAAGCCCTTGGTATCCTCCTGTCTGGCGTACCAGCTGATTACCATTCAGCGATAAGCCAATCTGCCAAGAGAAGCATTACAAAGCTTGCACAGCGGATGTCCGATTACTTCTGGTCTGGAGTTTGTCCTTCGTCAGCTAGCAAGTGGGACATCCTTCACATTAGCAACGGCAACATGAGAATCATGTCCCAGAAAATTTTGGATGCCTCTGGTGAGAATCCTAGCATTGTGCTAAGTGCTGCAACTTCTGTTTGGATGCCAGTGTCTCAGCAAAGGGTGTTTGATTTCCTCCGTGATGCACAAATGAGAGGTGAGTGGGATGTTTTGTGCAATGGTGGATCAATGGAGGAGATGATCCATATCGCTAAAGGAGAAGAAATTGGAAATTCAGTTTCTATCCTTCGTGCTGATAATATTGCCATGAAGGAGCTTCGAGAGAAAAAGATACCCTTTACCATCCGTCGTTACTTGCCTGATGGAAGTTATGAAGATCGGGGAGTTGGTGAACTGATTGTGGAAGATTCGCGGAAGAGGCAAGTTGGTGTTAATTGA 1308 0.4434 MGDRAMETAPNSEMMGNDSEMKGSKLILIDLASAAMDELIKMAEPDSHLWIKSPESGNEVLNHYEYERICSPFNTPKLNGFVTEATRETVLLCTNVDALVEAFLDADRWAEMFPCMIAEAETLEILSYGIDGTRNGFMQLMHAEIQLPTPLVPVREYSFIRYCKQHAEGKWVVLDVSIDFDRNGPNRNPNMSCKRLPSGCILEDMPDGLSKITWVDHSQYDECAFHQTCRQLVNSGFAFGAHRWVATLQRHCEALGILLSGVPADYHSAISQSAKRSITKLAQRMSDYFWSGVCPSSASKWDILHISNGNMRIMSQKILDASGENPSIVLSAATSVWMPVSQQRVFDFLRDAQMRGEWDVLCNGGSMEEMIHIAKGEEIGNSVSILRADNIAMKELREKKIPFTIRRYLPDGSYEDRGVGELIVEDSRKRQVGVN 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03090 435 SUPERFAMILY Bet v1-like 28 255 - -
Tsu06g03090 435 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 10 393 IPR042160 -
Tsu06g03090 435 SUPERFAMILY Bet v1-like 280 370 - -
Tsu06g03090 435 SMART START_1 30 254 IPR002913 GO:0008289
Tsu06g03090 435 Gene3D - 366 426 IPR036161 GO:0003677|GO:0003899|GO:0006351
Tsu06g03090 435 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 10 393 - -
Tsu06g03090 435 Pfam START domain 31 253 IPR002913 GO:0008289
Tsu06g03090 435 SUPERFAMILY RPB6/omega subunit-like 390 425 IPR036161 GO:0003677|GO:0003899|GO:0006351
Tsu06g03090 435 CDD START_ArGLABRA2_like 25 253 - -
Tsu06g03090 435 Gene3D - 29 254 IPR023393 -
Tsu06g03090 435 ProSiteProfiles START domain profile. 21 257 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03090 Tsu-Chr6 40650775 40655854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03090 29 391 Homeobox Transcription Factor Family AT3G61150 52.861 7.45e-131 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03090 K09338 - gmx:100785102 452.981