Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03067 ATGGCACCTTCTCGGGTGGCAGGAGGTTTAGCCCAATCATCATCAAGTTCTGGAATTTTCTTTCAAGGAGAGGGACAGTCACATAATTTAGTCAACTCTCACTTGAGCTCATCTTTAGTCAACTCATCTAACACTGTTCCTGGAACTGGTCATTCCAACCTTGGTCCAGTTTCTGGGGATATGAATAATGCAATTTTGAACAGTGTGGCAAACTCAGCACCAAGTGTTGGAGCTAGTTCTTTAGTCACAGATGCAAATTCTGCACTCTCTGGTGAACGCCATATGCAAAGAAGTGCTAGCATTAATGGTGACTCATACTTAAGATTACCTGCCTCACCTTTGTCATTCACATCAAATAATATTAGCATTTCTGGGTCACCTGCAATGGATGGTTCCTCTGTGGTACAGCAGAATTCTCATCAAGATCAGAATGCTCAACAATTGCAGCAGAATCAACAGAAGCTGCAGGGTGCTTCAAGTTCTATGCATTTGCCTGTCTCACAAACTGGCTCATCTTCGCACCAAATGGGTGCACAAGTAGCAGGATCTTTCATTCAAGATCCAAATAATATATCGCACTTGCTGAAAAAACGTAGACTGGATATCAAACAAGAAGATATAATGCAACAACAGGTAATACAGCAGCTTCTTCAGAGACAAGACCCTACACAATTCCAAAGTCGTAGTCCACAGTTACAGGCTATGTTTCAGCAACAGCATAGGCTTAAGCAACAACAAATCTTCCAGTCATTGCCCCAGGCCCAGCGAATGCAATTGctgcagcagcaacaacaacaacagcagcagcaacaacaacagcaacaacaacaaatgcAGAGGCAGCAAATACAACAACAAATGATGCAGCCCTCAGCTGGTGTTAAGCGTCCACCTGATAGTGGTGTTGGAGGTGTATGTGCCCGTCGATTGATGCAGTACCTCTATCATCAAAGACAGCGACcaagtGATAATAGTATTGCTTATTGGAGGAAATTTGTGGCTGAATATTACTCTCCCCGTGCAAAGCAACGGTGGTGCTTGGCATTATATAGTAATGTTGGACACCATACAGCTGGTGTTTTACCGCAAGCAACTACGCATGCTTGGCAATGTGATATATGTGGAACTAAATCTGGAAGAAGGGGATTTGAAGCAACTTTTGATATACTGCCCAGACTTAACGTAGTCAAATTTGGTGGTGGTGTGATCGATGAACTTCTGTTTTTGGACTTGCCGCGTGAAATAAGATTTTCTTCTGGTTTGATGATGTTAGAATATACAAAAGCAGTTCAAGAGTGTGTGTACGAGCAGCTCCGTGTTGTTCGTGAGGGTCAACTTCGTATCGTATTTACTCAAGATCTGAAGATATTTTCTTGGGATTTCTGTGTAAGGCGCCATGAAGAACTTCTTCCTCGAAAGTTAGTTGCACCACAGGTGAACCAATTAGTTCAAGTAGCGCAAAAATGCCAAAGTACAATTTCTGAAAGTGGGTCAGATGGGGTTTCTCAGCATGACTTGCAAACAAACAGCAACATGGTCCTAACTGCTGGGCGTCAGCTTGCAAAGAGTTTGGAGCTACAATCACTAAATGACTTGGGCTTTTCAAAAAGATTTGTGAGAACTTTACAGATTTCTGAGGTTTGCAATAGCATGAAAGATCTAATCGATATCTGTTTTGATCACAATGTCGGAGCAATCGAGAGTTTGAAAAATTATTCTCAATTTTCAACCTCGTCAAAGCTCCAAATGCAAAAGATGCAGGAGATGGAACAGGCAGCAAATGTTCAAGGTCTCCCACCTGATCGAAACACACTTAATAAGCTGATGACATTGAATCCCGGGTCCAACAATCTTGTAAACAACAATCTCAATATGGGCAATCGTGGTACTTTGACTGGGCCATCACAAGCCGCTCTGGCAATGTCCAATTACCAGAATCTTCTCATGAGGCAAAACTCGATGAACTCAAGCCCCAGCTCACTTCATCGAGAAGGGTCCCCTTTCAATAATACGAACCAAAGTCCCTCATCAGTTTCTTTGCAAGGTGCTGGTGCTGCTGCTATAATCCCAGGCTCTATGCAGAATTCACCTCACAATAGTAGTGGTGGTTTCTCAAATCAACATCTACCCTCACAACAGCAGCGGCAGcagcaacagcagcagcagcagcagcaacaccACCTTCAACAGCGCTCGTTAAGTGCGAATAATTTACCTCAACAAAATCACTCACAGGGACCTCAAGGAAATCAATCACTGCAACAACAGATGATCCAGCAACTACTGCAGGATATGTCAAATAACAATGGGGGAGTGCAACAACAGTCGCATAGTGGACCCAATGTAAGTGGGAATATGGCAAAGAATAATTTGGGTTTTGGGGGACAAACTCCACCCACAGCTGGAGGAGGCTCTGCCAGTGGTCCAGCAAATAATGGACCTGTTTCAAGGAGTAATAGCTTTAAAGCTGCATCAAACAGTGATTCTTCTGCAGCAGCTGGTGGAGGCAGCAACAATGGATTCAACCAGAGAGCATCTGATATGCAGCAAAATCTTGCTTTGCAAGACGTGGCTTCGGAATTTGGCCATGAGTTCGCGGATAACCCCTTCTTTAACAGTGATCTTGATGATAACATGGGTTTTAACTGGAAGACATGA 2658 0.4176 MAPSRVAGGLAQSSSSSGIFFQGEGQSHNLVNSHLSSSLVNSSNTVPGTGHSNLGPVSGDMNNAILNSVANSAPSVGASSLVTDANSALSGERHMQRSASINGDSYLRLPASPLSFTSNNISISGSPAMDGSSVVQQNSHQDQNAQQLQQNQQKLQGASSSMHLPVSQTGSSSHQMGAQVAGSFIQDPNNISHLLKKRRLDIKQEDIMQQQVIQQLLQRQDPTQFQSRSPQLQAMFQQQHRLKQQQIFQSLPQAQRMQLLQQQQQQQQQQQQQQQQQMQRQQIQQQMMQPSAGVKRPPDSGVGGVCARRLMQYLYHQRQRPSDNSIAYWRKFVAEYYSPRAKQRWCLALYSNVGHHTAGVLPQATTHAWQCDICGTKSGRRGFEATFDILPRLNVVKFGGGVIDELLFLDLPREIRFSSGLMMLEYTKAVQECVYEQLRVVREGQLRIVFTQDLKIFSWDFCVRRHEELLPRKLVAPQVNQLVQVAQKCQSTISESGSDGVSQHDLQTNSNMVLTAGRQLAKSLELQSLNDLGFSKRFVRTLQISEVCNSMKDLIDICFDHNVGAIESLKNYSQFSTSSKLQMQKMQEMEQAANVQGLPPDRNTLNKLMTLNPGSNNLVNNNLNMGNRGTLTGPSQAALAMSNYQNLLMRQNSMNSSPSSLHREGSPFNNTNQSPSSVSLQGAGAAAIIPGSMQNSPHNSSGGFSNQHLPSQQQRQQQQQQQQQQHHLQQRSLSANNLPQQNHSQGPQGNQSLQQQMIQQLLQDMSNNNGGVQQQSHSGPNVSGNMAKNNLGFGGQTPPTAGGGSASGPANNGPVSRSNSFKAASNSDSSAAAGGGSNNGFNQRASDMQQNLALQDVASEFGHEFADNPFFNSDLDDNMGFNWKT 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03067 885 PANTHER LIM DOMAIN-BINDING PROTEIN 738 883 IPR029005 -
Tsu06g03067 885 PANTHER LIM DOMAIN-BINDING PROTEIN 166 744 IPR029005 -
Tsu06g03067 885 MobiDBLite consensus disorder prediction 767 844 - -
Tsu06g03067 885 MobiDBLite consensus disorder prediction 652 681 - -
Tsu06g03067 885 MobiDBLite consensus disorder prediction 692 731 - -
Tsu06g03067 885 MobiDBLite consensus disorder prediction 122 177 - -
Tsu06g03067 885 Pfam LIM-domain binding protein 309 570 IPR029005 -
Tsu06g03067 885 Coils Coil 256 286 - -
Tsu06g03067 885 MobiDBLite consensus disorder prediction 281 300 - -
Tsu06g03067 885 MobiDBLite consensus disorder prediction 652 731 - -
Tsu06g03067 885 MobiDBLite consensus disorder prediction 38 57 - -
Tsu06g03067 885 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 166 744 - -
Tsu06g03067 885 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 5 151 - -
Tsu06g03067 885 PANTHER LIM DOMAIN-BINDING PROTEIN 5 151 IPR029005 -
Tsu06g03067 885 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 738 883 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03067 Tsu-Chr6 40422771 40428549 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03067 296 572 C2H2 Transcription Factor Family AT1G43850 55.197 1.57e-97 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03067 - - gmx:100816886 1129.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g03067 06 40422771 40428549 Tsu06g03067 06 40422771 40428549 ECH