Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03034 ATGGATTGTGAGAGATCTAATTTCAAAGTTTTGATCGTAGACCATGATGATGCTTCTTTGAGATATCTTGCTAATATACTCATGGAATGGCAATGCATAGTTAAAATTGCAAAAGATGCTCAACAAGCTTTGCTCACTCTTCAAGCCAATTACGGCCTTTATGATCTCATAATTACAGAGTTCCATCTACTAGGAATGAATGGATTCGATTTTCAAAAGCATATACAAGATCAATTTGAAATACCTATGATAATGATGTCTAAAGACAGCAGCCAACATTTGATCTCGGagattttaaaaattggagCAGCACACTTTATTGTAAAGCCATTTTGTGCTGAAGATTTCAAAAACATTTGGAAGTATGTTATAGAAGCAAGAAAACATAAACTATGTCGTAAGAGAAACAATACTTACGAATACCTACGAGACGGAGAATATCAAGTTGTTAAAAAACCAAGGCTCATTTGGACAACGTATCTTCACAATTTGTTTCTTCTTGCTATTACACAAATTGGATTGGAAAAAGCTAAGCCAAAGAAAATTTTGGAGATAATGAATATACCAAACTTGACAAAGGAAAATGTAGCAAGTCACTTACAGAAGTATCAGAAATTTCAACGAAAAGTCGCCGATAAAGGAATGGTTGGGGGTATATCCAATAGAGCATTCGGATCAATATTTGCTTCAGATGTTCCAACGTCAACGGTAAAAGAAATTAAGGAAATGCGAGCAAAAAAACGTTGCAAGCCGACAATGGAGCATTCACAAACATTATCATGTCAAATGGGACTTGATAGCAATGTTCTTAACTTTGATGGTGCATCTACTAGCTTTTCTTCATATAGAGGAGAAGAAAGATCAAATGTTCTTAACTTTGATTGTGCTTCCAACAATGAGGTTGAGTTCAACCAAATGAAATTTAACCTTTCTAATTTTTTGATGGCTGATGACATGAATCTTATGAATGAGATGAATGTGAACCATGATGCAAGTGAATTGAAAtcatacatgttcaatttcttTCAAGATGTGCTACCCCTTGAGCAGTTAAATAAAGGTTGTGATGATGTATCTCCTTCGGCTGAAATCACAACATGCGTGTGGAATGAGTCACCAAAAAGTTCAAGCCAAAACTCTAATCAGTTATATAATGGTGATAACAATGTTGTCTTTCCTCTAACTGGAATCACATCATGTGTGTTAAGAGAGCCACCAAGTTCAAACCAAATCTCGATTCAGGAATTTGATATGGATCTTATTGAAGCCATGTTTGGTACCAGATAA 1287 0.3427 MDCERSNFKVLIVDHDDASLRYLANILMEWQCIVKIAKDAQQALLTLQANYGLYDLIITEFHLLGMNGFDFQKHIQDQFEIPMIMMSKDSSQHLISEILKIGAAHFIVKPFCAEDFKNIWKYVIEARKHKLCRKRNNTYEYLRDGEYQVVKKPRLIWTTYLHNLFLLAITQIGLEKAKPKKILEIMNIPNLTKENVASHLQKYQKFQRKVADKGMVGGISNRAFGSIFASDVPTSTVKEIKEMRAKKRCKPTMEHSQTLSCQMGLDSNVLNFDGASTSFSSYRGEERSNVLNFDCASNNEVEFNQMKFNLSNFLMADDMNLMNEMNVNHDASELKSYMFNFFQDVLPLEQLNKGCDDVSPSAEITTCVWNESPKSSSQNSNQLYNGDNNVVFPLTGITSCVLREPPSSNQISIQEFDMDLIEAMFGTR 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03034 428 Pfam Response regulator receiver domain 10 117 IPR001789 GO:0000160
Tsu06g03034 428 Gene3D - 7 141 - -
Tsu06g03034 428 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 152 205 IPR006447 GO:0003677
Tsu06g03034 428 SUPERFAMILY CheY-like 6 155 IPR011006 -
Tsu06g03034 428 ProSiteProfiles Response regulatory domain profile. 9 124 IPR001789 GO:0000160
Tsu06g03034 428 Gene3D - 149 210 - -
Tsu06g03034 428 PANTHER RESPONSE REGULATOR 23-RELATED 8 412 - -
Tsu06g03034 428 SMART REC_2 8 120 IPR001789 GO:0000160
Tsu06g03034 428 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 412 IPR045279 GO:0009736
Tsu06g03034 428 SUPERFAMILY Homeodomain-like 150 209 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03034 Tsu-Chr6 40016642 40025686 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03034 8 215 Response Regulator Gene Family AT4G31920 35.652 1.17e-37 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu06g03034 Response_reg 2.9e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03034 - K14491 cam:101506714 307.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g03034 06 40016642 40025686 Tsu06g03034 06 40016642 40025686 ECH