Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03026 ATGATGATTCCCTATATATACAATACCTTACTCTTCAATCTTTTAACACACCAACTCTATTTTCAATTCTCACTTCCTTTGATCTCAAAACCATTTTCAACTCTAGTCTCCAACATGTTTACTACTAGTAGCAGCTCTTCCTCGTCCTCTTCCTCCCACACAATATCACTGCCGAATTTAGAGATCTCTCGTGGGATGTCGTTTTCCAACGAGGAGGTGCGGTTAGCTGCAACTACCCCGAAGAAGCGTGCAGGGAGAAAGAAGTTCAAGGAGACACGCCACCCGGTTTACAGAGGTGTCAGGAGGAGGAACTTAGATAAATGGGTGTGTGAAATGAGGGAACCTAACAAGAAGACTAAGATTTGGTTAGGGACTTTTCCAACGGCCGAGATGGCAGCAAGAGCACACGATGTTGCGGCATTGGCATTGAGAGGTCGTAATGCTTGTCTAAACTTTGCAGACTCAGCTTCGCGGCTTCCTATTCCTGCAAGTACAGAGACAAAAGATATACAAAAGGCGGCTGCAGAAGCTGCCGAGGCTTTTAGACCAGACAATATTTTAACGACTAACGACATTGATGACACAGCCGAAGCTTCCGCCTCCACAGAGGAGCCGCGTATGTTTAGTttggaagaggaagaggaagaagagggaGAGTTGAACATTCCAGAGTCATTGAGGAATATGGCACTAATGTCCCCTACACATAGCTTAGAGCATGAGTTTGAACATATTACTGTAGATTTTGAAGATGTTGAAGTGTCACTATGGAGTTTTTCGATTtga 786 0.4262 MMIPYIYNTLLFNLLTHQLYFQFSLPLISKPFSTLVSNMFTTSSSSSSSSSSHTISLPNLEISRGMSFSNEEVRLAATTPKKRAGRKKFKETRHPVYRGVRRRNLDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVAALALRGRNACLNFADSASRLPIPASTETKDIQKAAAEAAEAFRPDNILTTNDIDDTAEASASTEEPRMFSLEEEEEEEGELNIPESLRNMALMSPTHSLEHEFEHITVDFEDVEVSLWSFSI 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03026 261 MobiDBLite consensus disorder prediction 196 220 - -
Tsu06g03026 261 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 42 261 - -
Tsu06g03026 261 Gene3D AP2/ERF domain 96 154 IPR036955 GO:0003700|GO:0006355
Tsu06g03026 261 PRINTS Ethylene responsive element binding protein signature 97 108 IPR001471 GO:0003700|GO:0006355
Tsu06g03026 261 PRINTS Ethylene responsive element binding protein signature 119 135 IPR001471 GO:0003700|GO:0006355
Tsu06g03026 261 Pfam AP2 domain 95 145 IPR001471 GO:0003700|GO:0006355
Tsu06g03026 261 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 42 261 IPR045277 GO:0003700
Tsu06g03026 261 SUPERFAMILY DNA-binding domain 96 155 IPR016177 GO:0003677
Tsu06g03026 261 ProSiteProfiles AP2/ERF domain profile. 96 153 IPR001471 GO:0003700|GO:0006355
Tsu06g03026 261 SMART rav1_2 96 159 IPR001471 GO:0003700|GO:0006355
Tsu06g03026 261 CDD AP2 97 155 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03026 Tsu-Chr6 39911564 39912657 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03026 62 259 AP2-EREBP Transcription Factor Family AT4G25470 54.106 8.63e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu06g03026 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03026 - - mtr:MTR_6g465850 273.478