Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03024 atgtTTCCAACTAACAACTCTTCCTCTTCAGACCCCATTTCCTCAATACCTTCCTCTTCCTCCCACAAAATATCTCTTCCCAATTTAGATGTCTCTCATGGTATGTTGTCAACTTCCAACGAGGAGGTGCGGTTAGCAGCAAGTACCCCGAAGAAGCGTGCAGGGAGAAAGAAGTTCAAGGAGACTCGCCACCCAGTGTATAGAGGTGTGAGGACGAGGAACTTAGATAAATGGGTGTGTGAAATGAGAGAGCCTAACAAGAAGACTAAGATTTGGCTAGGGACTTTTCCAACGGCCGAAATGGCAGCCCGAGCCCATGATGTTGCCGCATTGGCATTAAGAGGTCGCAATGCTTGTCTCAACTTTGCAGACTCAGCTTGGCGGCTTCGTATGCCTGCCACTACCGAGACAAAAGATATTCAAAAAGCGGCTGCAGAAGCTGCAGAGGCTTTTAGACCAGACAAAACTTTAATGACTAATGACAATGACACGGTTGAAGTTGCCGCCGCTATAGAGGAGCGGCTTATGTTTAGTATGGAAGAGGAAGATGAGGGAGAGTTGAACATTCCAGATTCATTGAAGAATATGGCACTAATGTCCCCAACACATAGCTTAGGGCATGAGTATGAACATATTGATCATGTAGACTTTCAAGATGTTGAGGTGTCACTATGGAGTTTTTCAATTTGA 690 0.4522 MFPTNNSSSSDPISSIPSSSSHKISLPNLDVSHGMLSTSNEEVRLAASTPKKRAGRKKFKETRHPVYRGVRTRNLDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVAALALRGRNACLNFADSAWRLRMPATTETKDIQKAAAEAAEAFRPDKTLMTNDNDTVEVAAAIEERLMFSMEEEDEGELNIPDSLKNMALMSPTHSLGHEYEHIDHVDFQDVEVSLWSFSI 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03024 229 MobiDBLite consensus disorder prediction 1 24 - -
Tsu06g03024 229 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700|GO:0006355
Tsu06g03024 229 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 1 229 - -
Tsu06g03024 229 SMART rav1_2 66 129 IPR001471 GO:0003700|GO:0006355
Tsu06g03024 229 Gene3D AP2/ERF domain 66 124 IPR036955 GO:0003700|GO:0006355
Tsu06g03024 229 PIRSF PTI6 4 167 IPR017392 GO:0003700
Tsu06g03024 229 PIRSF PTI6 144 229 IPR017392 GO:0003700
Tsu06g03024 229 SUPERFAMILY DNA-binding domain 66 125 IPR016177 GO:0003677
Tsu06g03024 229 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 229 IPR045277 GO:0003700
Tsu06g03024 229 Pfam AP2 domain 65 115 IPR001471 GO:0003700|GO:0006355
Tsu06g03024 229 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Tsu06g03024 229 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Tsu06g03024 229 CDD AP2 67 125 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03024 Tsu-Chr6 39904337 39905212 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03024 44 227 AP2-EREBP Transcription Factor Family AT5G51990 56.281 4.77e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu06g03024 AP2 1.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03024 - K09286 mtr:MTR_6g465850 293.123