Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03023 ATGTTTCCAACTGAaaactcttcctcttcctccGACATGTCATTGTCGAATTCAGAGGGCTCTCATTGGATGCCAGTTTTTAACGAGGAGGTTCGGTTAGCTGCGACTACCCCAAAGAAGCGTGCAGGAAGGAAGAAGTTTAAGGAAACTCGCCACCCGGTCTATAGAGGTGTGAGGAAGAGGAACAATGATAAATGGGTGTGTGAAATGAGGGAGCCTAACAAAAAGACTAAGATTTGGTTAGGGACTTTTCCAACAGTCGAGATGGCAGCCCGAGCCCATGATGTTGCCGCAATGGCATTAAGAGGCGGCTACGCCTGTCTTAACTTTGCAGACTCAGTGTGGCGGCTCCCTAAACCTGCCACCGCTCAAGCAAAAGATATACAAAAGGCAGCTACACAAGCCGCCGAGGCATTTAGGCCAAAGAAGATTTTATTGACTAATGAAGATGACATGTCTGTAGTTGTCACCGCCACCGAGGAGCAGCCTATTCTTTATAGCGAAGAAGAGGTAGTGATGAACATGCCAGAGTTGTTGAGTAATATGGCGCTGATCTCTCCGGTGCATAGCTTGGAGAATGAGTTCTATGAAGATGATGTGATGAACATGCCAGAATTGTGGGGAAATATGGCGCTAATGTCCCCTACACATGGCTTGGAGTATTATGACTATGAATATGTTAATGAAGACTTTCAAGATGCTGAGATATCACTatggaatttttaa 726 0.4394 MFPTENSSSSSDMSLSNSEGSHWMPVFNEEVRLAATTPKKRAGRKKFKETRHPVYRGVRKRNNDKWVCEMREPNKKTKIWLGTFPTVEMAARAHDVAAMALRGGYACLNFADSVWRLPKPATAQAKDIQKAATQAAEAFRPKKILLTNEDDMSVVVTATEEQPILYSEEEVVMNMPELLSNMALISPVHSLENEFYEDDVMNMPELWGNMALMSPTHGLEYYDYEYVNEDFQDAEISLWNF 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03023 241 Pfam AP2 domain 53 103 IPR001471 GO:0003700|GO:0006355
Tsu06g03023 241 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Tsu06g03023 241 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 6 192 - -
Tsu06g03023 241 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 196 240 IPR045277 GO:0003700
Tsu06g03023 241 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 196 240 - -
Tsu06g03023 241 MobiDBLite consensus disorder prediction 1 20 - -
Tsu06g03023 241 Gene3D AP2/ERF domain 54 112 IPR036955 GO:0003700|GO:0006355
Tsu06g03023 241 SUPERFAMILY DNA-binding domain 54 113 IPR016177 GO:0003677
Tsu06g03023 241 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Tsu06g03023 241 CDD AP2 55 113 IPR001471 GO:0003700|GO:0006355
Tsu06g03023 241 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Tsu06g03023 241 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Tsu06g03023 241 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 6 192 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03023 Tsu-Chr6 39891481 39892206 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03023 10 183 AP2-EREBP Transcription Factor Family AT4G25470 53.297 2.71e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu06g03023 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03023 - K09286 mtr:MTR_6g465990 269.626