Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03020 ATGTTTACCACCAACAACTCTTTCTATTCACATCCATCTACCTCCGACACGTCATTGCCAAATTCAGAGGGCTCTTATGGGATGTCAGTTACCAACGACGAGGTACGGTTAGCTGTGAGTACCCCGAAGAAGCGTGCGGGGAGGAAAAAGTTCAAGGAGACTCGCCACCCAGTATATAGGGGTGTGAGGACGAGGAACTTAGATAAATGGGTGTGTGAAATGAGGGAACCTAACAAAAAGACTAAGATTTGGCTAGGAACTTTTCCAACGGCCGAAATGGCAGCCCGAGCACATGATGTTGCCTCAATGGCATTGAGGGGCCGTTACGCTTGTCTCAACTTTGCTGACTCGGCGTGGCGGCTCCGTAAACCTGCCACCACTCAGGCAAAAGATATACAAAAGGCGGCTACACTGGCCGCCGAAGCTTTTAGACCAGTCAAGACTTTAATGACTAACGATATTGAAATGGATGTAG 475 0.4863 MFTTNNSFYSHPSTSDTSLPNSEGSYGMSVTNDEVRLAVSTPKKRAGRKKFKETRHPVYRGVRTRNLDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVASMALRGRYACLNFADSAWRLRKPATTQAKDIQKAATLAAEAFRPVKTLMTNDIEMDV 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03020 158 SUPERFAMILY DNA-binding domain 58 117 IPR016177 GO:0003677
Tsu06g03020 158 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 157 IPR045277 GO:0003700
Tsu06g03020 158 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700|GO:0006355
Tsu06g03020 158 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Tsu06g03020 158 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Tsu06g03020 158 MobiDBLite consensus disorder prediction 1 26 - -
Tsu06g03020 158 SMART rav1_2 58 121 IPR001471 GO:0003700|GO:0006355
Tsu06g03020 158 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 1 157 - -
Tsu06g03020 158 CDD AP2 59 117 IPR001471 GO:0003700|GO:0006355
Tsu06g03020 158 Pfam AP2 domain 57 107 IPR001471 GO:0003700|GO:0006355
Tsu06g03020 158 Gene3D AP2/ERF domain 58 116 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03020 Tsu-Chr6 39801963 39802437 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03020 6 153 AP2-EREBP Transcription Factor Family AT4G25470 64.000 1.73e-59 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu06g03020 AP2 3.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03020 - K09286 mtr:MTR_6g465460 230.335