Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03019 ATGTTTATAAGTAATAACTCTTCCTATTCACATCTCATTTCTTCACAAGATTCCGATGTGGAGATGCGGTTAGCCGCGAGTTGTCCCAAGAAGCGAGCAGGGAGGAAGATATTCAAGGAAACTCGCCACCCGGTATATAGGGGTGTGAGGAAGAGGAATTTAGATAAATGGGTTTGTGAAATGAGGGAGCCTAACAAAAAGACTAGGATTTGGCTAGGGACTTTTCCAACGGCCGAGATGGCAGCCCGAGCCCACGATGTTGCGGCTTTGGCATTCAGGGGCCGCAATGCTTGTCTCAATTTCGCAGACTCAGTGTGGCGTCTCCCTATTCCAGTGACCTCTGAGACAAAAGATATTCAAAGGGCAGCTACAGAAGCGGCCGAGGCTTTTAGACCGGAAAATACTTTAAAGACTAATAACATTGAAAAAGTTATAGCGATTGTAGCCGCAGAGGAGTTGAGTATGTTTGTTGTCAAAGTGGACGAAGAAGAGGTTGAGTCTTTTAGACCGGAAAATACTTTCGAGACTAATGACATTGAAACAGTTATAGCTGTTGTCGCCGCAAAGGAATTGAATATGTTTGTTGTGGAATTGGCagaagaggaggaggaagaTATGCCGGAATTTTGGAGGAATATGGTGCTAATGTCCCCTACACATAGCTTGGAGTATGAGTATGAAGATATTGATGTTGGTGAATTTCAAGATGTATCACTATGGAACTTTTAG 729 0.4252 MFISNNSSYSHLISSQDSDVEMRLAASCPKKRAGRKIFKETRHPVYRGVRKRNLDKWVCEMREPNKKTRIWLGTFPTAEMAARAHDVAALAFRGRNACLNFADSVWRLPIPVTSETKDIQRAATEAAEAFRPENTLKTNNIEKVIAIVAAEELSMFVVKVDEEEVESFRPENTFETNDIETVIAVVAAKELNMFVVELAEEEEEDMPEFWRNMVLMSPTHSLEYEYEDIDVGEFQDVSLWNF 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03019 242 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Tsu06g03019 242 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Tsu06g03019 242 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 5 164 - -
Tsu06g03019 242 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 166 237 - -
Tsu06g03019 242 CDD AP2 46 104 IPR001471 GO:0003700|GO:0006355
Tsu06g03019 242 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 5 164 IPR045277 GO:0003700
Tsu06g03019 242 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 166 237 IPR045277 GO:0003700
Tsu06g03019 242 SUPERFAMILY DNA-binding domain 45 104 IPR016177 GO:0003677
Tsu06g03019 242 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
Tsu06g03019 242 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Tsu06g03019 242 Pfam AP2 domain 44 94 IPR001471 GO:0003700|GO:0006355
Tsu06g03019 242 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03019 Tsu-Chr6 39767704 39768432 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03019 15 242 AP2-EREBP Transcription Factor Family AT5G51990 50.216 4.29e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu06g03019 AP2 2.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03019 - K09286 mtr:MTR_6g465460 284.648