Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03017 atgtttacaactaacaGCTCTTCCAATTCACACCCTATTTCCTCAAATCCTTCATCTTCCTATGAAGGCTCTTACGGGATGTCAGTATCCAACGAGGAGATGCGTCTAGCAGAGAGTTGCCCAAAGAAGCGTGCAGGGAGGAAGAAGTTCAAGGAGACTCGCCACCCGGTGTATAGAGGTGTGAGGAAGAGGAACTTAGATAAATGGGTGTGTGAAATGAGGGAGCCTAACAAGAAGACTAAGATTTGGCTAGGCACGTTTCCAACTGCCGAGATGGCAGCCCGAGCCCACGATGTTGCTGCACTGGCATTGAGAGGCCGTTACGCCTGTCTCAACTTTGCAGACTCTGTATGGAAGCTCCCTAAACCTGCCACCACTCAAACAAAAGATATACAAAAGGCTGCTGCACAGGCTGCTGAAGCTTTCAGACCAGACCAAAATTTAATGACTACTGATGCTGACACGGCTGTAGTTGCCGCCACTGCAGAGGAGCAAAGTATGCTTTGTATGGAAGAGGAGGAAGACGGAGTGATGAACATGCCAGAATATTTTAGGGATATGGCGTTAATGTCCCCTACACACAGCTTTGGGTATCAAGAGTATGAAGGGTATCAAGAGTATGAAGATATGGATGTAGAAGACTTTCAAAATGAAGAGgattttaaaaaaaaggtccGTAACCATGACTCAGGTTGCGACATCAAAGTTTTTAAGTCTCTGCAACCGCAACAGTACCATGATTGGAGTGCATTAGTCGCTTTTTTCCGCAATATCAAAGATTACAATCATTACCGCGACTGCAGACACTGTTCTTTTGTGCCTGATGTAAACCACGTTCCTGCTAAGGTTTCCAGATAA 858 0.4441 MFTTNSSSNSHPISSNPSSSYEGSYGMSVSNEEMRLAESCPKKRAGRKKFKETRHPVYRGVRKRNLDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVAALALRGRYACLNFADSVWKLPKPATTQTKDIQKAAAQAAEAFRPDQNLMTTDADTAVVAATAEEQSMLCMEEEEDGVMNMPEYFRDMALMSPTHSFGYQEYEGYQEYEDMDVEDFQNEEDFKKKVRNHDSGCDIKVFKSLQPQQYHDWSALVAFFRNIKDYNHYRDCRHCSFVPDVNHVPAKVSR 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03017 285 SUPERFAMILY DNA-binding domain 57 116 IPR016177 GO:0003677
Tsu06g03017 285 CDD AP2 58 116 IPR001471 GO:0003700|GO:0006355
Tsu06g03017 285 MobiDBLite consensus disorder prediction 1 26 - -
Tsu06g03017 285 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 221 IPR045277 GO:0003700
Tsu06g03017 285 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
Tsu06g03017 285 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Tsu06g03017 285 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Tsu06g03017 285 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 1 221 - -
Tsu06g03017 285 Pfam AP2 domain 56 106 IPR001471 GO:0003700|GO:0006355
Tsu06g03017 285 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
Tsu06g03017 285 Gene3D AP2/ERF domain 57 115 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03017 Tsu-Chr6 39710327 39711775 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03017 35 203 AP2-EREBP Transcription Factor Family AT5G51990 54.839 5.56e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu06g03017 AP2 3.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03017 - K09286 mtr:MTR_6g465460 259.61