Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03016 ATGGTTTTCACTAGTAACAACTCTTCCTTTTCATACACAATTTCATCAAAAGATTCTTATTCCTTTAACACGTCATCACCGGATTCTGAGCACCGGTTAGCGGTGAGTTGCCCCAAGAAGCCGGCGGGGAGAAAGATATTCAAGGAAACTCGCCACCCGGTATATAGGGGTGTGAGGAAGAGGAATTTAGATAAATGGGTTTGTGAAATGAGAGAACCCAACAAAAAGACTAGAATTTGGCTAGGGACATTTCCAACCGCCGAGATGGCAGCCCGAGCACACGATGTTGCTGCAATGGCATTGAGAGGCCAGTACGCCTGTCTTAATTTTGCCGACTCAGTGTGGCGGCTCCCTATTCCTGCAACCTCTAATACAAAAGATATTCAAAAGGCGGCTACTGAAGCCGCTGAGGCTTTTAGGCCAAGCAAGACTTTAATGACCAACGACATTGACACCGTTGTAGCTGTCATCGCTGCAAAGCAGTTGAGTATGTTTTGTGTGGAAGAGCAAGACGAAGAGGATATGTTGAATATTCCAGATTTTTTTAGGAATATAGCACTAATGTCCCCTGCACATAGTTTTGAGCACGAgtatgaagattttgaagacTTTCGAGATGATGAGGTATCACTATGGaacttttaa 645 0.4295 MVFTSNNSSFSYTISSKDSYSFNTSSPDSEHRLAVSCPKKPAGRKIFKETRHPVYRGVRKRNLDKWVCEMREPNKKTRIWLGTFPTAEMAARAHDVAAMALRGQYACLNFADSVWRLPIPATSNTKDIQKAATEAAEAFRPSKTLMTNDIDTVVAVIAAKQLSMFCVEEQDEEDMLNIPDFFRNIALMSPAHSFEHEYEDFEDFRDDEVSLWNF 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03016 214 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Tsu06g03016 214 Pfam AP2 domain 53 103 IPR001471 GO:0003700|GO:0006355
Tsu06g03016 214 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Tsu06g03016 214 SUPERFAMILY DNA-binding domain 54 113 IPR016177 GO:0003677
Tsu06g03016 214 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Tsu06g03016 214 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Tsu06g03016 214 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 3 214 - -
Tsu06g03016 214 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 3 214 IPR045277 GO:0003700
Tsu06g03016 214 Gene3D AP2/ERF domain 54 112 IPR036955 GO:0003700|GO:0006355
Tsu06g03016 214 CDD AP2 55 113 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03016 Tsu-Chr6 39697861 39698505 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03016 8 214 AP2-EREBP Transcription Factor Family AT4G25470 53.953 1.68e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tsu06g03016 AP2 7.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03016 - K09286 mtr:MTR_6g465460 299.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04475 01 52416218 52417195 Tsu06g03016 06 39697861 39698505 ECH
Tsu06g03016 06 39697861 39698505 Tsu06g03016 06 39697861 39698505 ECH
Tsu06g03016 06 39697861 39698505 Tsu01g04476 01 52428738 52429738 PCT