Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03015 ATGGTTTTCACTAGTAACAACAACTCTTCCTTTTCATACACTATTTCATCAAGACATTCTTCTTCCTTCGACAGATCATCACCCGATTCTGAGCTCCGGTTAGCGGCGAGTTGTCCCAAGAAGCGAGCGGGGAGGAAGATATTCAAGGAAACTCGCCACCCGGTTTATAGGGGTGTGAGGAAGAGGAACTTAGATAAATGGGTTTGTGAAATGAGGGAGCCAAACAAAAAGACTAGGATTTGGCTAGGGACTTTTCCAACGGCCGAGATGGCTGCCCGAGCACACGATGTTGCAGCAATAGCATTGAGGGGCCGCTACGCCTGTCTCAATTTCGCCGACTCAGTTTGGCGGCTCCCTATACCTGCAACCTCTGATACAAAAGATATTCAAAGGGCGGCTACTGAAGCCGCCGAGGCCTTTAGACCAAACAAGACTTTAATGACTAACGACATTGACTCCGCTGTAGCTGTCATCGCTGCAGAGGAGCTGAGTATATTTTGTGTGGAAGAGCGAGACGAAGAGGAAGTGTTGAGTATTCCAGATTTTTTTAGGAATATGGCACTGATGTCCCCTGCACATAGTATGGAGCATTTGTATGAAGATTTCGAAGACTTTCGAGATGATGAGgatttaaaaaaaatgtctgtTACAATGACCTGTGTTGTGACTGCAATTGGAATTCATTCGCCGGATTTCACCGTGACAACAAGGACTGTGGTCGTTGCCGTGACTGCGGACCCTGCTCTTTTATGCCTGGTTTATTGGTTTTCTTCTTGGCAAGGAAAGGTGCAAAAGAATAATGAATGA 807 0.4548 MVFTSNNNSSFSYTISSRHSSSFDRSSPDSELRLAASCPKKRAGRKIFKETRHPVYRGVRKRNLDKWVCEMREPNKKTRIWLGTFPTAEMAARAHDVAAIALRGRYACLNFADSVWRLPIPATSDTKDIQRAATEAAEAFRPNKTLMTNDIDSAVAVIAAEELSIFCVEERDEEEVLSIPDFFRNMALMSPAHSMEHLYEDFEDFRDDEDLKKMSVTMTCVVTAIGIHSPDFTVTTRTVVVAVTADPALLCLVYWFSSWQGKVQKNNE 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03015 268 Pfam AP2 domain 54 104 IPR001471 GO:0003700|GO:0006355
Tsu06g03015 268 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Tsu06g03015 268 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Tsu06g03015 268 SUPERFAMILY DNA-binding domain 55 114 IPR016177 GO:0003677
Tsu06g03015 268 CDD AP2 56 114 IPR001471 GO:0003700|GO:0006355
Tsu06g03015 268 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 5 219 - -
Tsu06g03015 268 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Tsu06g03015 268 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
Tsu06g03015 268 MobiDBLite consensus disorder prediction 1 23 - -
Tsu06g03015 268 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 5 219 IPR045277 GO:0003700
Tsu06g03015 268 MobiDBLite consensus disorder prediction 1 29 - -
Tsu06g03015 268 Gene3D AP2/ERF domain 55 113 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03015 Tsu-Chr6 39693385 39695056 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03015 12 207 AP2-EREBP Transcription Factor Family AT5G51990 53.140 2.01e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu06g03015 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03015 - K09286 mtr:MTR_6g465460 363.614