Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03013 ATGGCCACTATAACAACATCACTGTGCCATTACCACCTTCCCCTATCATCATCTTCCTTCAAAATCCACAAACCAACACACTCACACTCAAACTCACTCCCACTCTCACACTCCCCGCGTCATCTCATTCACCCCTTTCAATTCAAACCAAAAACCATTCCATCTCGTTTTCTTCTTTCCCAACCACCACGCGCCTATGTAACTGGACCTGCATCCGACCCGAATGTTGCTGACCCGGATCCGAAACTCGACGGATTGAAACAAGAGGAACCATATATACCAAGGGTTATTACATGGGAGCTTCTATCTTTGCTTCTTGTTAAGCATAAATTTCGTCTTGCTGTTTGTGTTGCTTCTCTTTTTGCTTGTACCACTTGTACTCTATCCATGCCTATTTTTTCTGGACGGTTTTTTGAAGTTCTTATTGGTGTCAGACCCGAGCCGTTATGGAGTCTTCTCAGTAAAATGGGAGTTCTGTATGCACTAGAGCCACTTTTTACagttatttttgttataaacatGAACATAGTGTGGGAGAAAGTTATGTCAACACTAAGAGCTCAAATCTTTGGAAAATTATTGATTCAGAAGGttgaattttttgacaaatacaaGGTAGGCGAAATCACTGGTTTGTTAACATCTGATTTGGGTTCTCTTAAAAATATTGTCAGTGAGAATGTTTCAAGGGATCGCGGATTCAGGGCATTATCTGAGGTCACTGGAACAATAATCATACTTTTTACTTTATCCCCTCAACTGGCTCCAATTCTTGGTGTTCTGATGATCGCAGTTTCTGTTTCAATTGCTGTCTACAAGAGATCAACTTTGCCTGTTTTTATAGAACATGGTTTGGCCCAAGCATCTATCTCTGATTGTATAACAGAAACTTTTTCTGCTATTAGAACAGTGCGATCTTTTAGTGGAGAAAAGCGCCAAATGTTTATGTTTGCTAACCAGGTTCTATCCTTCCAATTGAGTGGTATAAAGCTTGGAACTTTCAAATCTATTAACGAATCCTTGACTAGAGTTGCTGTTTATATTTCTTTAACTGCTCTGTATTGTCTCGGAGGAAGCAAAGTTAAGGCGGGTCAACTCTCTGTTGGAACTATGGCATCTTTTATTGGATATACATTCACTTTAACATTCGCTGTTCAAGGATTGGTTAATACTTTTGGAGATCTTCGTGGATCTCTTGCGGCTGTTGAGAGGATCAACTCTGTATTGTCTGGAGTTCAAGTTGATGATGCCCTTGCCTATGGCTTAGAAAGAGAACTGAAACAAAAAGCAGTGAACAATGAAAACCTTAACTTGTTCTTCTCTGATAGTTCTTCTGagaaaaaccaaaataatcATTTGCATTACATGTCAGCATTAAAAACGTCGACTAATCTGTTTAGCTTAGCTTGGTCTGGAGATATTTGTCTTGAAGATGTTTATTTCTCTTATCCTCTAAGGCCTGATGTGGAAATTTTGCGTGGCTTAAACTTAAGATTAAAATGTGGAACTGTAACTGCACTAGTAGGTGCTAGTGGTGCAGGAAAGAGTACAATAGTACAGCTATTGTCTCGTTTTTATGAGCCAGCAAGAGGTTGTATAACAGTTGGTGGAGAAGATGTCCGAACATTTGATAAAAGTGAATGGGCCCGGGTTGTTTCTATCGTAAATCAAGAACCTGTTCTGTTTTCGGTGTCTCTTGGAGAAAATATTGCATATGGACTTCCAGATGACGATGTTTCTAAAGACGATGTCATTAAGGCAGCGAAGGCCGCAAATGCTCATGAATTTATAATTTCACTTCCACAGGGCTACGATACACTTGTTGGTGAGCGTGGAGGCCTACTGAGTGGAGGACAGAGGCAGAGAATTGCCATTGCCCGAGCTCTATTGAAGAATGCTCCCGTCCTTATACTTGATGAGGCTACAAGTGCCCTGGATACCGTCAGTGAGCGCTTGGTCCAAGATGCTCTCAACCGTTTGATGAAGGGTAGGACAACATTAGTCATAGCTCACAGATTAAGCACAGTACAAAATGCACATCAAATTGCGCTATGTTCAGATGGGAAGATTGCAGAACTAGGCACTCATTTTGAGCTATTGGCTAAGAAGGGCCAATATGCTTCATTGGTTGGCAATCAAAGGCTTGCATTTGAATAG 2157 0.401 MATITTSLCHYHLPLSSSSFKIHKPTHSHSNSLPLSHSPRHLIHPFQFKPKTIPSRFLLSQPPRAYVTGPASDPNVADPDPKLDGLKQEEPYIPRVITWELLSLLLVKHKFRLAVCVASLFACTTCTLSMPIFSGRFFEVLIGVRPEPLWSLLSKMGVLYALEPLFTVIFVINMNIVWEKVMSTLRAQIFGKLLIQKVEFFDKYKVGEITGLLTSDLGSLKNIVSENVSRDRGFRALSEVTGTIIILFTLSPQLAPILGVLMIAVSVSIAVYKRSTLPVFIEHGLAQASISDCITETFSAIRTVRSFSGEKRQMFMFANQVLSFQLSGIKLGTFKSINESLTRVAVYISLTALYCLGGSKVKAGQLSVGTMASFIGYTFTLTFAVQGLVNTFGDLRGSLAAVERINSVLSGVQVDDALAYGLERELKQKAVNNENLNLFFSDSSSEKNQNNHLHYMSALKTSTNLFSLAWSGDICLEDVYFSYPLRPDVEILRGLNLRLKCGTVTALVGASGAGKSTIVQLLSRFYEPARGCITVGGEDVRTFDKSEWARVVSIVNQEPVLFSVSLGENIAYGLPDDDVSKDDVIKAAKAANAHEFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPVLILDEATSALDTVSERLVQDALNRLMKGRTTLVIAHRLSTVQNAHQIALCSDGKIAELGTHFELLAKKGQYASLVGNQRLAFE 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03013 718 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 474 712 IPR003439 GO:0005524
Tsu06g03013 718 ProSitePatterns ABC transporters family signature. 615 629 IPR017871 GO:0005524
Tsu06g03013 718 SUPERFAMILY ABC transporter transmembrane region 91 405 IPR036640 GO:0005524|GO:0016021
Tsu06g03013 718 Pfam ABC transporter transmembrane region 115 384 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu06g03013 718 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 466 713 IPR027417 -
Tsu06g03013 718 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 43 716 IPR039421 -
Tsu06g03013 718 PANTHER ABC TRANSPORTER B FAMILY MEMBER 28 43 716 - -
Tsu06g03013 718 Gene3D - 471 714 IPR027417 -
Tsu06g03013 718 Gene3D ABC transporter type 1, transmembrane domain 84 411 IPR036640 GO:0005524|GO:0016021
Tsu06g03013 718 CDD ABC_MTABC3_MDL1_MDL2 474 713 - -
Tsu06g03013 718 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 114 397 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu06g03013 718 CDD ABC_6TM_TAP_ABCB8_10_like 119 405 - -
Tsu06g03013 718 Pfam ABC transporter 492 643 IPR003439 GO:0005524
Tsu06g03013 718 SMART AAA_5 501 695 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03013 Tsu-Chr6 39661468 39668770 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03013 471 718 Calmodulin-binding Proteins AT2G36910 53.785 4.68e-74 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03013 K05657 - gmx:100791034 1125.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g03013 06 39661468 39668770 Tsu06g03013 06 39661468 39668770 ECH