Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03011 ATGGATTTCGACGGTGGTAATAAGCGTGTTTATAACCGACTCGGTGGTTCTACCGGTGGTGGCGGTGATTCCAGGAATCAGAAAGTGTGTTTTCAATGGCAAGCGGGGAAGTGTAATCGTTATCCATGTCCATTTTTGCATAGTGAGTTACCTACTTCTAATGGAAACGGTGCACCTTCAAAGCGGCCTTATTCTGATAATTCGGGTTTTTCGGGTAACCGGCGTGGTGGTGGTTCGGGTTTTAATACGTGGGGGCCAGGGCGTGGTGGTGGACGTGGCCGTGGTGGTGGCCGTGGTGCTGTTGGAGGTGGTGGTAGAGGAGTTGTTGTGAATGTTGAAAAAGTTTGCACTTATTGGATTCAAGGAACTTGTAGTTATGGAGATAGGTGCAAGTTTCTTCATTCTTGGAGTATAGGGGATGGCTTTTCTTTATTGACTCAGCTTGAAGGACATAAGAAGGTTGTGAGTGGAATTGCTATGCCTTCTGGTTCGGATAAGCTTTATACCGGAAGTACTGATGAGACAGTAAGAGCTTGGGACTGCCAGTCTGGACAGTGTATAGCTGTGATCAATCTTGGTGGTGAAGTAGGTTGTATGATCAGTGAAGGTCCATGGCTTTTTGTAGGCATACCCAATTTTGTTAAGGCCTGGAACACACAAAATTCTATGGAGATAAGTCTAGATGGCCCTGTCGGACAAGTTTATGCACTTGTTGTGATTAATGATATGCTCTTTGCTGGTACACagGATGGAGCTATATTAGTATGGAAGTTCAATGTAGCTGCCAACTGTTTCGAGCCTGCTGCATCGCTGAAAGGCCACACGCGTGGTGTTGTTTCATTAGTGGTTGGAGCGAATAGACTTTATTCTGGTTCAATGGACAACACGATTAGAGTGTGGAACCTTGAAACTTTGCAGTGTATACAGACACTAACAGAGCACACGTCTGTTGTGATGTCTGTTCTTTGTTGGGATCAGTTCCTGATATCTTGTTCATTAGACAAAACAGTGAAGGTGTGGTTTGCTACAGAAACTGGAAATTTGGAAGTGACATATACTCACCCTGAAGAACATGGTATACTCACCCTCTGTGGGATGCATGATTCACACGGGAAGCCCATATTGATGTGCTCATGCAATGATAACACTGTTCGCCTCTATGATCTGCCATCATTTGCAGAGAGAGGTAAGATATTCAACAAACAAGAAGTGCGGGCAATTCAGACCGGTCCTGGTAGCATATTCTTCACCGGCGATGGAACCGGCCAAGTGAGAGTGTGGAATTGGATATCTGAGCCAGCTGCTAATAGCACCCAATAA 1320 0.4523 MDFDGGNKRVYNRLGGSTGGGGDSRNQKVCFQWQAGKCNRYPCPFLHSELPTSNGNGAPSKRPYSDNSGFSGNRRGGGSGFNTWGPGRGGGRGRGGGRGAVGGGGRGVVVNVEKVCTYWIQGTCSYGDRCKFLHSWSIGDGFSLLTQLEGHKKVVSGIAMPSGSDKLYTGSTDETVRAWDCQSGQCIAVINLGGEVGCMISEGPWLFVGIPNFVKAWNTQNSMEISLDGPVGQVYALVVINDMLFAGTQDGAILVWKFNVAANCFEPAASLKGHTRGVVSLVVGANRLYSGSMDNTIRVWNLETLQCIQTLTEHTSVVMSVLCWDQFLISCSLDKTVKVWFATETGNLEVTYTHPEEHGILTLCGMHDSHGKPILMCSCNDNTVRLYDLPSFAERGKIFNKQEVRAIQTGPGSIFFTGDGTGQVRVWNWISEPAANSTQ 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03011 439 PANTHER - 1 436 IPR044715 -
Tsu06g03011 439 PRINTS G protein beta WD-40 repeat signature 328 342 IPR020472 -
Tsu06g03011 439 PRINTS G protein beta WD-40 repeat signature 288 302 IPR020472 -
Tsu06g03011 439 PRINTS G protein beta WD-40 repeat signature 167 181 IPR020472 -
Tsu06g03011 439 MobiDBLite consensus disorder prediction 54 99 - -
Tsu06g03011 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 148 189 IPR001680 GO:0005515
Tsu06g03011 439 SUPERFAMILY WD40 repeat-like 136 432 IPR036322 GO:0005515
Tsu06g03011 439 ProSitePatterns Trp-Asp (WD) repeats signature. 288 302 IPR019775 -
Tsu06g03011 439 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 436 - -
Tsu06g03011 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 148 180 - -
Tsu06g03011 439 SMART c3hfinal6 112 136 IPR000571 GO:0046872
Tsu06g03011 439 SMART c3hfinal6 24 49 IPR000571 GO:0046872
Tsu06g03011 439 Pfam Zinc finger domain 116 134 - -
Tsu06g03011 439 Gene3D - 123 225 IPR015943 GO:0005515
Tsu06g03011 439 SUPERFAMILY CCCH zinc finger 113 135 IPR036855 GO:0046872
Tsu06g03011 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 310 IPR001680 GO:0005515
Tsu06g03011 439 ProSiteProfiles Zinc finger C3H1-type profile. 24 50 IPR000571 GO:0046872
Tsu06g03011 439 MobiDBLite consensus disorder prediction 1 26 - -
Tsu06g03011 439 Pfam WD domain, G-beta repeat 144 180 IPR001680 GO:0005515
Tsu06g03011 439 Pfam WD domain, G-beta repeat 268 301 IPR001680 GO:0005515
Tsu06g03011 439 Pfam WD domain, G-beta repeat 306 340 IPR001680 GO:0005515
Tsu06g03011 439 SMART WD40_4 304 341 IPR001680 GO:0005515
Tsu06g03011 439 SMART WD40_4 220 257 IPR001680 GO:0005515
Tsu06g03011 439 SMART WD40_4 141 180 IPR001680 GO:0005515
Tsu06g03011 439 SMART WD40_4 391 428 IPR001680 GO:0005515
Tsu06g03011 439 SMART WD40_4 264 301 IPR001680 GO:0005515
Tsu06g03011 439 SMART WD40_4 345 388 IPR001680 GO:0005515
Tsu06g03011 439 Gene3D - 227 438 IPR015943 GO:0005515
Tsu06g03011 439 MobiDBLite consensus disorder prediction 54 78 - -
Tsu06g03011 439 ProSiteProfiles Zinc finger C3H1-type profile. 111 137 IPR000571 GO:0046872
Tsu06g03011 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 271 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03011 Tsu-Chr6 39646478 39651621 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03011 150 312 Eukaryotic Initiation Factors Gene Family AT2G46290 25.405 3.25e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu06g03011 WD40 0.018 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03011 - - mtr:MTR_6g465150 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g03011 06 39646478 39651621 Tsu06g03011 06 39646478 39651621 ECH