Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02966 ATGGTATCCAAAAACCCGAACCCGCCCGAAGGTTTCTGCTTGGATCCGACTCCTATGGCTCTACCCGGTTTCGGCCCCTTCTCTTCCGCCTCCGCCGCCTCCAACTCTTCCGACGACGCCTCCAAGAAAATTCGCAAACCATATACTATAACTAAGTCTAGAGAGAATTGGACTGAACCTGAACATGACAAGTTCCTTGAAGCTCTTCAACTGTTTGACCGTGACTGGAAAAAGATTGAAGCATTTATTGGATCAAAGACTGTTATACAGATACGTAGCCACGCACAGAAATACTTTCTGAAGGTTCAAAAGAGTGGAGCAAATGAACATCTTCCTCCACCCAGGCCTAAAAGAAAAGCTGCTCATCCATATCCTCAAAAAGCTTCCAAAAGTGCTCCTGTACTCCCACAAGTACCAGGATCTTTTCAGTCTTCATCGGCTTTGCTTGAACCTGGATTTATACTGAAGCATGAATCCATACCAATGCTTGAAACTCCTATTATGAACACTGCGGTGTCTTCATGGTCAAACCACCCGTTGCAAAATACCAATTCATTACAAGtaccaaaaataaataattcttgCAGTAGCAGTGAAAGTACTCCTACAGTGCGGCCGGTTGGTGAATCTAACAGTCAAGGGAATAAACTTCTTCCATTGAGAGTTCTTCCAGATTTTTCTCAAGTATACAACTTCATTGGTAGTGTATTTGACCCAGAAGCAACTGAGCATCTACAGAAACTTAAACAAATGGACCGTATAGATGTTGAGACGGTGCTTTTGTTGATGAGAAATCTGTCTATCAACTTAACTAGCCCAGATTTTGAGGATCATAAAAAGATGCTTTCATCCTATGAAGTTGATCGTGAGACAAATAACTATCTCAACCAAGATAGACCGATACACGACGAACAGTTGAAGAGTGCTACTACTTAA 936 0.4167 MVSKNPNPPEGFCLDPTPMALPGFGPFSSASAASNSSDDASKKIRKPYTITKSRENWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKSGANEHLPPPRPKRKAAHPYPQKASKSAPVLPQVPGSFQSSSALLEPGFILKHESIPMLETPIMNTAVSSWSNHPLQNTNSLQVPKINNSCSSSESTPTVRPVGESNSQGNKLLPLRVLPDFSQVYNFIGSVFDPEATEHLQKLKQMDRIDVETVLLLMRNLSINLTSPDFEDHKKMLSSYEVDRETNNYLNQDRPIHDEQLKSATT 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02966 311 MobiDBLite consensus disorder prediction 104 137 - -
Tsu06g02966 311 ProSiteProfiles SANT domain profile. 52 103 IPR017884 -
Tsu06g02966 311 PANTHER PROTEIN REVEILLE 6 3 301 - -
Tsu06g02966 311 MobiDBLite consensus disorder prediction 291 305 - -
Tsu06g02966 311 Gene3D - 56 104 - -
Tsu06g02966 311 MobiDBLite consensus disorder prediction 183 212 - -
Tsu06g02966 311 CDD SANT 56 99 IPR001005 -
Tsu06g02966 311 PANTHER SWI/SNF COMPLEX-RELATED 3 301 - -
Tsu06g02966 311 ProSiteProfiles Myb-like domain profile. 49 99 IPR001005 -
Tsu06g02966 311 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 52 101 IPR006447 GO:0003677
Tsu06g02966 311 SUPERFAMILY Homeodomain-like 48 104 IPR009057 -
Tsu06g02966 311 MobiDBLite consensus disorder prediction 24 47 - -
Tsu06g02966 311 MobiDBLite consensus disorder prediction 291 311 - -
Tsu06g02966 311 Pfam Myb-like DNA-binding domain 54 99 IPR001005 -
Tsu06g02966 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 49 103 IPR017930 -
Tsu06g02966 311 SMART sant 53 101 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02966 Tsu-Chr6 39018593 39025977 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu06g02966 Myb_DNA-binding 7.8e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02966 - - gmx:100783949 459.529