Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02927 ATGGGAAGTTACAGGTTCATCTTGAAGCAAAATGTGTTTTCTGCTCCTGAAGATTTTGTTGTAGATTATGGTGCTAGGTTTGTTGGTCCTTTTGGTGTTAAGGAATACAAGAACCTTTCTTATAATGTTTTAGAAACTATTCATAGGATTAATGTTGGAGGTATGAAATTAACTCCTTTTAATGATACCCTTTGGAGGACTTGGATTCCTGATAAGGATTTTCTGGTTTTTAAGGAAGCTGCTAAGACTGTAGTGAGTACTCACACACCAGATTACCAGAAAGGAGGTGCGACTCGAGAGATCGCGCCTGATAGTGTTTATATGACAGCTCAGGAGATGAATAGGGATAATCAATCCATTTTAGCTTCACGATTTAACATAACATGGAATTTTACAGTGGCTTCTGGTGGTGTTAGAGTTCGACATTTGGTTCGGTTGCATTTCTGCGATATTGTTAGTCCTGCTCTTAATTTGCTTTACTTTGATGTGTATATCAATGGATATTCTGCATATAAGGATGTTGATTTGTCGTCTCTTACTTTCCATATGCTTGGAACTCCGGTGTATGTGGATTTCGTTGTTGATTCTGATGATTCGGGTGTTATTCAAATAAGTGTCGGACCTTCTGATCTTAGTAGTTCAATGAGGATGAATGCGATTCTTAATGGTGCGGAGATAATGAAGCTTGTGAATGTTATTGATTCACATTCACTTGTTGCTCCTAGGAAAAAAGGGTTGGTGTTCGTGTTGGTTGGTTCAATTTTTGGAGGAATTGTTGTTTTACTTTTAGTTGTAGCTGTTTTTGTAATTTGTTGGAGATGCAGAAAGAAGAAACCGAAACTAAGGTCGGTTGAAAGTGTAGGATGGACGCCGTTACGCGTGTTTGGAGGAAGTTCGCTTAGTAGAATGTCTTATCCGTCTCCCGGTTCTTACGGACATTTCAGTTTGAAAATCGCATTTGCTGATATACAATTAGCAACTAACAATTTTGATGAAAGTCTAATTATCGGATCTGGTGGATTCGGTATGGTTTACAAAGGAGTTCTAAGAGACGGTGTAAAGGTTGCTGTCAAGAGAGGCATGCCAGGATCAAGACAAGGTCTCCCAGAATTCCAAAGCGAAATAACAATTTTATCCAAAATTCGACATCGCCATCTTGTTTCGCTAGTTGGATTTTGCGAAGAAAATTCAGAAATGATACTTGTCTATGAGTATGTCGAGAAAGGTCCACTCAAAGATCTTTTATATGGTTCTGAAGGACTTCAACCTTTGTCGTGGAAGCAGCGTCTCGAGATATGCATCGGTGCAGCTCGAGGTCTACACTATCTTCACACCGGTTTTGCTCAAGGAATCATCCACCGCGACATTAAATCAACCAACATTTTGCTCGATGAAAATTATGTTGCTAAGGTTGCTGATTTCGGTCTTTCGAGATCCGGACCTTGTATAAATGAAACTCATGTGAGTACTAATGTGAAAGGTAGTTTCGGTTATCTTGATCCGGAGTATTTTCGAAGGCAACAACTTACGGATAAATCAGATGTTTATTCATTCGGCGTTGTTCTTTTCGAGGTTCTTTGTGTTAGACCAGCTGTTGATCCACGACTTGATAGGGAACAAGTGAATTTAGCAGAATGGGCTCTTCAATGGCAAAGGAAGGGTATGTTAGAGCATATTATTGACCCTTATCTTGTCGGTAAGATCAAAGTAAGCTCATTGAAGAAATTTGGTGAAACCGCGGAAAAATGTTTAGCGGAAGATGGCGTTGATAGGCCGTCTATGGGTGATGTGTTATGGAATTTGGAATATTCACTTCAGCTTCAAGAAAGGGATCTAGAAGTGAATGTCACATATGATGATAGCATTGATAATGCTGAATTGAATGTTTCGTCTTCCATAATTCCTAGGACTCCTCCTAACAGCATGAGAATAGAGGGAGATTATGATAACAATAACTCTAATGTAAGTGCTTCTATAGTAGACAATGTTACTATGGGCTATTTCCTTGATGACCACGACACTGCTCCTGATCCCAGCATGAATACATACCCTGATGTACTCTTTCTATCATCCACATCTCCACCATAA 2088 0.3937 MGSYRFILKQNVFSAPEDFVVDYGARFVGPFGVKEYKNLSYNVLETIHRINVGGMKLTPFNDTLWRTWIPDKDFLVFKEAAKTVVSTHTPDYQKGGATREIAPDSVYMTAQEMNRDNQSILASRFNITWNFTVASGGVRVRHLVRLHFCDIVSPALNLLYFDVYINGYSAYKDVDLSSLTFHMLGTPVYVDFVVDSDDSGVIQISVGPSDLSSSMRMNAILNGAEIMKLVNVIDSHSLVAPRKKGLVFVLVGSIFGGIVVLLLVVAVFVICWRCRKKKPKLRSVESVGWTPLRVFGGSSLSRMSYPSPGSYGHFSLKIAFADIQLATNNFDESLIIGSGGFGMVYKGVLRDGVKVAVKRGMPGSRQGLPEFQSEITILSKIRHRHLVSLVGFCEENSEMILVYEYVEKGPLKDLLYGSEGLQPLSWKQRLEICIGAARGLHYLHTGFAQGIIHRDIKSTNILLDENYVAKVADFGLSRSGPCINETHVSTNVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCVRPAVDPRLDREQVNLAEWALQWQRKGMLEHIIDPYLVGKIKVSSLKKFGETAEKCLAEDGVDRPSMGDVLWNLEYSLQLQERDLEVNVTYDDSIDNAELNVSSSIIPRTPPNSMRIEGDYDNNNSNVSASIVDNVTMGYFLDDHDTAPDPSMNTYPDVLFLSSTSPP 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02927 695 Gene3D - 43 230 - -
Tsu06g02927 695 CDD STKc_IRAK 336 602 - -
Tsu06g02927 695 SUPERFAMILY Protein kinase-like (PK-like) 304 602 IPR011009 -
Tsu06g02927 695 Pfam Protein tyrosine and serine/threonine kinase 335 596 IPR001245 GO:0004672|GO:0006468
Tsu06g02927 695 Gene3D Transferase(Phosphotransferase) domain 1 406 625 - -
Tsu06g02927 695 PANTHER OS07G0166700 PROTEIN 4 623 IPR045272 GO:0004714|GO:0006468
Tsu06g02927 695 Pfam Malectin-like domain 41 228 IPR024788 -
Tsu06g02927 695 SMART serkin_6 330 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g02927 695 Gene3D Phosphorylase Kinase; domain 1 303 405 - -
Tsu06g02927 695 ProSiteProfiles Protein kinase domain profile. 330 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g02927 695 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Tsu06g02927 695 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 4 623 - -
Tsu06g02927 695 ProSitePatterns Protein kinases ATP-binding region signature. 336 358 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02927 Tsu-Chr6 38516788 38520603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02927 2 639 Receptor kinase-like Gene Family AT3G46290 51.708 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Tsu06g02927 PK_Tyr_Ser-Thr 4.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02927 - - gmx:100814974 1008.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02927 06 38516788 38520603 Tsu06g02927 06 38516788 38520603 ECH
Tsu06g02927 06 38516788 38520603 Tsu01g04380 01 51628465 51631029 PCT