Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02925 ATGGATCCTAATGGTTCTATTGATGATAAGTGTGACAATAGACTCTACATTGGCAATCTTGATCTTAGAATTACAGAAGCTGCTCTACTCAAAATGTTTAATCCATATGGAAAGATAGTGTCCGAGGACTTCTTGTGGCACACTCGTGGCCCAAAACGCGGGGAACCACGTGGTTTTGCTTTTATCCAGTATAGTACAAAAGAGGAAGCAATATTGGCCAAGGAGAAAATGCACGGGAAGTTAGCTTGCGGCCGGCCGTTGGTTGTACGCCTTGCAAGTGAGAGATACGCACTAGAAACACCCACTAGCTCTAAAAATGTTGTAGGTGAAGGGCACAAGTTGCATCTCACTGGCGGTGGCACGGGACAGACGAGTCGTAGTGCGAAAATAGCGGCAATAAAGAACAAATTGAAGTCTTTAGAGGAGGATAACTCTAGGACCAAGAAGCAGAAGCAGAGTGACAATATATCTTGA 474 0.4451 MDPNGSIDDKCDNRLYIGNLDLRITEAALLKMFNPYGKIVSEDFLWHTRGPKRGEPRGFAFIQYSTKEEAILAKEKMHGKLACGRPLVVRLASERYALETPTSSKNVVGEGHKLHLTGGGTGQTSRSAKIAAIKNKLKSLEEDNSRTKKQKQSDNIS 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02925 157 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 87 IPR000504 GO:0003723
Tsu06g02925 157 PANTHER RNA-BINDING PROTEIN 18-RELATED 5 154 - -
Tsu06g02925 157 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 5 154 - -
Tsu06g02925 157 SMART rrm1_1 14 90 IPR000504 GO:0003723
Tsu06g02925 157 SUPERFAMILY RNA-binding domain, RBD 7 97 IPR035979 GO:0003676
Tsu06g02925 157 Coils Coil 130 150 - -
Tsu06g02925 157 MobiDBLite consensus disorder prediction 102 127 - -
Tsu06g02925 157 MobiDBLite consensus disorder prediction 138 157 - -
Tsu06g02925 157 CDD RRM_RBM18 14 93 IPR039157 -
Tsu06g02925 157 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 94 IPR000504 GO:0003723
Tsu06g02925 157 Gene3D - 10 103 IPR012677 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02925 15 95 Eukaryotic Initiation Factors Gene Family AT1G71770 38.272 4.82e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02925 K24527 - gmx:100806572 247.284