Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02921 atgtcATCGCCGGGATTCAATACCGGTGGTAATGGATCATCGGAATATTTCTCCGGCAGATCAACAAACACCATCAACAACCTCACCACCACCAACAATCTCTCTCTCTACCGAACCCAACACCAACCACTTCCTCCAATTTTTCTAGATCCTTCTTCACAGATCCCTCAACCACGCTTCATCGGAAAACGCACCTTAGCTGAATTTCAAACCCAACAAAACCAAACCTACAACGTCAACAACCACAATCTTAACCTTAACAACAACAATCATAACCATAACCATGTTCTCTCAAATCTTTTACTTCGTTCTGTAAAaccaagaacaacaacaaattttCAGTTTCAAAATAATTCTCCTTCATCTTTCTCACTTCCTGAATTACAACAAAACCCTTTTAACAACAACTACCAAACGCACCGTTTAGGTGTTCCTTTACAAATGAACCCAAATTTTCATAACTATCGAACCACCTCGAATTTAACTCAAGTAATAAACCGGGTTCAAAATCAAACCGTTGAACCggtagaagaaaaaaagatcAACAACGATCACACGCTTCTTCAAGAATTAGAAAAACAGCTTCTAGAAGATAACGACGAAGATGGTGAAGCTTCTGTTATAACAACAAGTGAATGGTCAGAAACATATCAGAATTTAATTGGGCCTGTCACTGGGCCTTGTAATGGGCCTATTCAGGCCCAGAAACAGGTTTCTTCATCTCCTACTTCGTCTACCACGTCATCAACTTCTTCTTCAGCTGCTTCACCTGCTTCTGTTTGTTCCAAACAAACGTTAATTGAAGCTGCGAACGCTATTTCAGAAGGTAAAAACGACGTCGCTTTAGAGATCTTAACACGTTTAGTTCAGAATTTGAATCCTAATTTGATGAATTCGGATCAACGGTTAACTAATTGCATGGTTTCGGCTCTGAAATCGAGGTTGAATCCGGTTGAAAATCAACCTATTGTTGCGGAATTGTTCAGTAGAGAACATGCTGAGTCGACTCAGTTGTTGCTTGAAAACTCGGTTTGTTTCAAGGTTAGTTTCATGGCTGCGAATCTCGTAATTATGGAAGCAGCATTTGAAGAAAACGGTAACGGTAAAGGTAATGGAAACGGAAAAGGTTTCTGTgtggttgattttgaaattggACAGGGGAAACAGTATGTGAATCTACTTCACGCGCTAAAATCGCGTGAAGCTTCGGTTTCTGCTGCATCGGGTTTCACGTTGAAGGTAGTTGCAGTGGCGGAGAGCGGCGGCGACGAGAGAGTTAAAGCGGTGGGTGAAATGTTGAGTCGTCAAGCGGAGAGGTTAAGAATTGGTTTCGATTTTCGTATTGCAACCGTTTCTCAGAGACAAGTGAACGAGTTAACTCGCGAGTTATTAGGCTGTGACTCGGAAGAAACACTTGTTGTGAATTTCGCGTTTAAGCTGAATCGAATTCCAGATGAAAGTGTTTCAACGGAGAATCCACGCGACGAGCTTTTGAGGCGCGTGAAGAAACTTACGCCACGCGTGGTTACAATTGTGGAACAAGAAATGAATTGTAATACGGCGCCGTTTTTGGCACGAGTTGCTGAGTCATGGTCTTATTATTCTGCTTTGTATGACTCGGTTGAGTCTGTTTTAGGAAAAGATAACTCGGATCGAGTCAAGATTGAAGAAGGACTGAGTAGGAAATTATGTAACTCGGTGGCTTGTGAAGGTAGAGATCGTGTTGAACGGTGTGAGGTTTTTGGAAAATGGCGCGCAAGGATGAGTATGGCGGGGTTTATGTTGAAACCAATGAGTCAAAACGTTGTTGAGTCGATAAAATCGCGACTCGCTGTGAGTAAGAACAACCGAGTTAACACGGGACTCAGTGTGAAAGAAGAGAACGGTGGAATTTGCTTTGGTTGGATGGGAAGAACACTCACCGTTGCTTCTGCTTGGCGTTAA 1944 0.4115 MSSPGFNTGGNGSSEYFSGRSTNTINNLTTTNNLSLYRTQHQPLPPIFLDPSSQIPQPRFIGKRTLAEFQTQQNQTYNVNNHNLNLNNNNHNHNHVLSNLLLRSVKPRTTTNFQFQNNSPSSFSLPELQQNPFNNNYQTHRLGVPLQMNPNFHNYRTTSNLTQVINRVQNQTVEPVEEKKINNDHTLLQELEKQLLEDNDEDGEASVITTSEWSETYQNLIGPVTGPCNGPIQAQKQVSSSPTSSTTSSTSSSAASPASVCSKQTLIEAANAISEGKNDVALEILTRLVQNLNPNLMNSDQRLTNCMVSALKSRLNPVENQPIVAELFSREHAESTQLLLENSVCFKVSFMAANLVIMEAAFEENGNGKGNGNGKGFCVVDFEIGQGKQYVNLLHALKSREASVSAASGFTLKVVAVAESGGDERVKAVGEMLSRQAERLRIGFDFRIATVSQRQVNELTRELLGCDSEETLVVNFAFKLNRIPDESVSTENPRDELLRRVKKLTPRVVTIVEQEMNCNTAPFLARVAESWSYYSALYDSVESVLGKDNSDRVKIEEGLSRKLCNSVACEGRDRVERCEVFGKWRARMSMAGFMLKPMSQNVVESIKSRLAVSKNNRVNTGLSVKEENGGICFGWMGRTLTVASAWR 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02921 647 PANTHER SCARECROW-LIKE PROTEIN 8 55 646 IPR030013 -
Tsu06g02921 647 MobiDBLite consensus disorder prediction 226 256 - -
Tsu06g02921 647 MobiDBLite consensus disorder prediction 1 20 - -
Tsu06g02921 647 ProSiteProfiles GRAS family profile. 253 647 IPR005202 -
Tsu06g02921 647 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 55 646 IPR005202 -
Tsu06g02921 647 MobiDBLite consensus disorder prediction 230 256 - -
Tsu06g02921 647 Pfam GRAS domain family 263 647 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02921 Tsu-Chr6 38446407 38448533 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02921 24 647 GRAS Transcription Factor Family AT5G52510 46.293 1.31e-147 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tsu06g02921 GRAS 6e-88 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02921 - - aip:107644872 650.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02921 06 38446407 38448533 Tsu06g02921 06 38446407 38448533 ECH
Tsu06g02921 06 38446407 38448533 Tsu01g04387 01 51717471 51719864 PCT