Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02889 ATGTCAAGTGAAGTTGTCAAGAAAGAAGAATCTCTAAATCTGAAAATCACTAGAAAAAGCTATGTTAAACCTGAGGAAAAACTAGGGAAAAAAGTGTGTCAATTGGTCACATTTGATCTACCTTACTTAGCTTTTTattataaccaaaaaataattttatacaaaGGAGGTAACTTTGAAGAAAATGTTGAGAATCTCAAAAATGGGCTTAGTGTGGTTTTGAAGGAATTTCATCAATTAGCTGGAAAATTAGGAAAAGATGAAGAGGGTGTGTTTTTTGTTGAATATGATGATGACATGGTTGGTGTTGAAGTTATTGAAGCTGTTGCTAATGAGATTAGTGTTGAAGATCTAACTGATGCTGAAGGTAGTGCTATTTTGAAGGAATTGATTCCTTATAGTGGAATCTTGAATTTGGAAGGCATGCATAGACCTTTGTTGGCTGTTCAGTTAACAAAGCTCAAAGATGGGCTAGCAATGGGCTTGGCTTTTAACCATGCTGTTGTTGATGGAACTTCCACATGGCACTTCATGACTTCGTGGGCCGAGATATGCAGCAGCGCACCCCCCACAACACCCCGACCATTCCTGGAACGGACCAAGTCCCGAAACACACGTGTAAAGCTTGACCTCTCCCTACCCGAGCCGAAAAGCCCATCAACCAACGGAGAGGCAAAGCTCGAGCCCGAAGGCCCTCCTCCATCAGCCAATGGTGAGGCTAATGGTGAGGCAAAGCCTGAGCCTGAAGGCCCACCACCATCAGCCAATGGTGGGGCAAAACCCATACTTAGAGAAAAGATCTTCAAATTTTCTGAGTCGGCCATCGACAAAATCAAGTCAACAGTCAACCAAACTCTTCCAACAGACGGTTCAAAACCATTCTCAACATTCCAGTCTCTCTCCGCTCATATTTGGCGTCATGTGACCCTTGCACGTGACCTAAAACCCGAAGAATATACAGTGTACACCGTCTTTGCAGACTGCCGAAAACGAGTGGACCCACCAATGCCAGAGGCTTACTTCGGTAACCTAATTCAAGCCATATTCACTGTCACCGCCGCTGGGCTTTTGTCGGCCCACCCACCACAATTCGGCGCTTCTTTGATCCAAAAGGCAATTGAATCTCATGATGCTAATGCTATTAATGGACGTAACAAAGAGTGGGAGAGTGATCCCAAGATTTTTCAATTCAAAGATGCTGGAGTGAATTGTGTGGCAGTTGGAAGTTCACCAAGGTTTAAGGTTTATGACATTGATTTTGGATGGGGAACACCAGAGATTGTGAGGAGTGGAACCAATAACAAATTTGATGGAATGATTTACTTGTATCCAGGGAAGAGTGGAGGTAGGAGCATTGATGTTGAGCTAACATTGGAGCCTGAGGCCCTAGGAAGGTTGGAACAAGATAAGGAATTTCTTATGGAATTATAA 1431 0.4291 MSSEVVKKEESLNLKITRKSYVKPEEKLGKKVCQLVTFDLPYLAFYYNQKIILYKGGNFEENVENLKNGLSVVLKEFHQLAGKLGKDEEGVFFVEYDDDMVGVEVIEAVANEISVEDLTDAEGSAILKELIPYSGILNLEGMHRPLLAVQLTKLKDGLAMGLAFNHAVVDGTSTWHFMTSWAEICSSAPPTTPRPFLERTKSRNTRVKLDLSLPEPKSPSTNGEAKLEPEGPPPSANGEANGEAKPEPEGPPPSANGGAKPILREKIFKFSESAIDKIKSTVNQTLPTDGSKPFSTFQSLSAHIWRHVTLARDLKPEEYTVYTVFADCRKRVDPPMPEAYFGNLIQAIFTVTAAGLLSAHPPQFGASLIQKAIESHDANAINGRNKEWESDPKIFQFKDAGVNCVAVGSSPRFKVYDIDFGWGTPEIVRSGTNNKFDGMIYLYPGKSGGRSIDVELTLEPEALGRLEQDKEFLMEL 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02889 476 PANTHER BAHD ACYLTRANSFERASE DCR-RELATED 19 472 - -
Tsu06g02889 476 Pfam Transferase family 14 472 - -
Tsu06g02889 476 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 19 472 - -
Tsu06g02889 476 MobiDBLite consensus disorder prediction 188 260 - -
Tsu06g02889 476 Gene3D - 236 469 IPR023213 -
Tsu06g02889 476 Gene3D - 11 211 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02889 Tsu-Chr6 38038469 38042599 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02889 66 476 Monolignol Biosynthesis Gene Families AT5G48930 26.905 7.58e-34 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02889 K19747 - gmx:100790669 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02889 06 38038469 38042599 Tsu06g02889 06 38038469 38042599 ECH