Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02882 ATGAGTTGCTGCAGGTCAGGAACGGTGAAGCAGTCGCGGAAGGAGTTTTTCTCTGAAAGATTAACCACTGGAACTTTGATTTCACAACTGACACCTTATGTCCAAGAGGAGTATGCAACATTTAAAGATGTTAACAAATTTGCTGAAAAGCTATCAAGTAATCTCACTGCTATTCGTGCTGTCCTAAAAGATGCTGATGAGAAGCAAATCACAAGTGATGCTGTAAAAGATTGGCTGCAAAAGCTGACTGATGCAGCACATGTTCTTGAAGATATATTGGACGAATGTTCAATAGTTTCCGAAGCATACAGAGAGAAATTCTCCATCATCCATCCTAAGAAGCTATATGCTCGCCGTAGCATtggaaaaaagatgaaaaatgttGCTGAAAGGATTGATGCTATTGCTGAAGAAAGGGTCAAGTTTGGATTAAATCCCGGGACCATGGAGCATCGTCTTGAAGATGATGTATGGCGCCAAACTACCTCTGTAATCACTGAACCCCAAATTCATGGAAGAGATGCGGATAGGGAGAAGGTTGTTGAGTTTCTTCTCAAGCATGCTTGTGAAAGGGATGAACTCTCTGTCTATTCCATTGTTGGCCATGGTGGATATGGAAAAACAGCACTTGCTCAACTGGTCTTCAATGATGAAAGGGTAAATGCTCACTTTCCTTTGAAAATATGGGTTTGTGTTTCTGATGATTTTAATATCACGAAACTTTTCCGGTCCATCATAGAAATCGTTGATGGAAAAAATCCAGATCTCATTTCCTTGGAATCAATGCAAAAAAAGGTTCAACAAATTTTGCAAACCAAAAGGTATTTGCTTGTCCTTGATGATGTTTGGAGTGAAGACCCAGAGAAATGGAGCAGGTTCAAGTATCCATTGCAAAATGGAACAAAAGGTGCATCAATTTTAGTCACTACACGACTTGAGACAGTTGCAAACATCGTGGGAAATCATCCTGCTCATCATTTGGTAGGTTTATCAGATGATGACATTTGCCTTATTAGTCTTCCCATGCAATTGACACAACTACAAGATCTCAGACATCTCATGATTAGATGGTGTGGCACATTAAGATCAATGCCTTTTAATATTGGGGGGTTAACTCATTTGAGAACATTAAGCACTTTCATTGTTGGTTCGGAGGCTAGGTTTGGTTTAGCAGAGCTACATACTTTACAACTAGGAGGCAAGCTACACATCAAATGCCTTGAGAATGTGGCGAATGAAAGCGATGCTAGAAGAGCTAATTTAATTGGCAAGAAGGAATTAAGTCACTTATACTTGTCATGGAGTGGGGATGCTAATTCACAAGGTACTGGTACTAGCGCTGAGCAAGTCCTTGAAGCCCTTGAGCCTCACACAAATCTCAAATATTTTGGGATGAAGGGTTATAAGGgaataaaaattccaaattgGATGAGAAATACTTCTATTTTGGAAGGTCTGGTTGAGGTTATACTTTATAAATGCAGAAACTGTGATCGACTTCCTCCACTTGGTAAATTACCATGTTTAACAACTCTTTATGTGTCTGGAATGAGAGATGTGAAGTACATTGATGATGACTTGTATGAAGGTGCGACCAAGAAGGCTTTTCCATCACTAAAGAAAATGTCGTTACATGATTTACCAAATTTAGAGAGGGTGTTGAAAGCTGAAGGAGTAGAGATGCTATCACAACTTTCTGACTTGAGTATAGAGAGGATCCCTAAGCTTGCATTTCCATCCCTTCCATCTGTTGAGACTCTTCGTGCTAGTGGGAATACTAAAGATTTATCGGAGTCCCTTTCTGAAAGAGATTCCAATAATGATGGTGCATCTTTCCTGAAGGGAATTGCAGCTAGTATGCATAATCTCAAAAAACTTGTCATTGAAAACTTTTATGAACTCAAGGTACTACCTAATGAACTCAACTCTCTCAGTTCCCTACAAGAACTATACATTTCAGGTTGTTTTAAGCTTGAGTCTCTCCCTGAGTGTGTACTGCAAGGTTTGAGTTCCCTTCAAGttttgagatttttattttGCAGTAGCTTAAAATCCTTGCCGGCAGGTATGAAAGGCCTGACTTGTCTTGAGAGTCTAGGATTTACACTTTGCAGTGGCTTAAAATCCTTGCCCGAAGGTATGACAAGCCTGACTTCCCTTCAAAAATTAGAAATCAATAGTTGTCGCGAATTAGCCTCATTACCAGCTAGCTTTAAAGAACTCAAAAACTTGCATGAATTACGCATTTCTATGTGCCCTATACTGgagaagaaatgcaagaaaGAAACAGGGGAAGAATGGCATAAGATAGCTCATGTACCAaaattggaattggaatttgAATATCCTTTCGAACATGAACCTGAATCATTATTTCACGGGGAAGTCATGTCATTATGGAATAAGCGAAAGCAATTCTGGCGGAAGAAGCCAAAGCAATCCTGGCTTTATAATGAATTTGACGGGATGGTTGACGACGTGACGAATGCTGAACTGATAAATCAAGTGGCCGAGCTTTGGGGTGTATTAGAAGGGTTAAAGATTGTGAGAGACGGAGGATTTCAACATATAGAATTATGCGTGGATTCAGCTTCTGTTATTTCTATCATTCAAAATGGAGGTGGTGGAAATGTAATGGGACACAGAATTGTTCAAAGAATTCAACAAATGCTGAGATTGGATTGGGAAGTAAAGCTTAAGCATATATACCGAGAAGAGAATTGTTGCGCAGATGGTCTAGCCAACTTGGCCATTAATCTACCGAAAGGGATAGTCTTGTTTGATGTATGTCCTAATGCCGTTAGGGAACGCTTTGATGCGGATGTAATAGAAGTTACCACTCCTCGCTTAGTTATTATCTAG 2862 0.3882 MSCCRSGTVKQSRKEFFSERLTTGTLISQLTPYVQEEYATFKDVNKFAEKLSSNLTAIRAVLKDADEKQITSDAVKDWLQKLTDAAHVLEDILDECSIVSEAYREKFSIIHPKKLYARRSIGKKMKNVAERIDAIAEERVKFGLNPGTMEHRLEDDVWRQTTSVITEPQIHGRDADREKVVEFLLKHACERDELSVYSIVGHGGYGKTALAQLVFNDERVNAHFPLKIWVCVSDDFNITKLFRSIIEIVDGKNPDLISLESMQKKVQQILQTKRYLLVLDDVWSEDPEKWSRFKYPLQNGTKGASILVTTRLETVANIVGNHPAHHLVGLSDDDICLISLPMQLTQLQDLRHLMIRWCGTLRSMPFNIGGLTHLRTLSTFIVGSEARFGLAELHTLQLGGKLHIKCLENVANESDARRANLIGKKELSHLYLSWSGDANSQGTGTSAEQVLEALEPHTNLKYFGMKGYKGIKIPNWMRNTSILEGLVEVILYKCRNCDRLPPLGKLPCLTTLYVSGMRDVKYIDDDLYEGATKKAFPSLKKMSLHDLPNLERVLKAEGVEMLSQLSDLSIERIPKLAFPSLPSVETLRASGNTKDLSESLSERDSNNDGASFLKGIAASMHNLKKLVIENFYELKVLPNELNSLSSLQELYISGCFKLESLPECVLQGLSSLQVLRFLFCSSLKSLPAGMKGLTCLESLGFTLCSGLKSLPEGMTSLTSLQKLEINSCRELASLPASFKELKNLHELRISMCPILEKKCKKETGEEWHKIAHVPKLELEFEYPFEHEPESLFHGEVMSLWNKRKQFWRKKPKQSWLYNEFDGMVDDVTNAELINQVAELWGVLEGLKIVRDGGFQHIELCVDSASVISIIQNGGGGNVMGHRIVQRIQQMLRLDWEVKLKHIYREENCCADGLANLAINLPKGIVLFDVCPNAVRERFDADVIEVTTPRLVII 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02882 953 SUPERFAMILY Ribonuclease H-like 834 924 IPR012337 -
Tsu06g02882 953 Gene3D Ribonuclease Inhibitor 581 770 IPR032675 -
Tsu06g02882 953 Gene3D Ribonuclease Inhibitor 386 580 IPR032675 -
Tsu06g02882 953 Pfam Reverse transcriptase-like 832 917 IPR002156 GO:0003676|GO:0004523
Tsu06g02882 953 PRINTS Disease resistance protein signature 196 211 - -
Tsu06g02882 953 PRINTS Disease resistance protein signature 269 283 - -
Tsu06g02882 953 PRINTS Disease resistance protein signature 715 731 - -
Tsu06g02882 953 PANTHER OS05G0414200 PROTEIN 339 663 - -
Tsu06g02882 953 PANTHER OS05G0414200 PROTEIN 44 336 - -
Tsu06g02882 953 Coils Coil 48 68 - -
Tsu06g02882 953 Pfam Rx N-terminal domain 25 102 IPR041118 -
Tsu06g02882 953 Gene3D - 153 323 IPR027417 -
Tsu06g02882 953 CDD RNase_H_like 834 915 IPR044730 -
Tsu06g02882 953 Gene3D - 807 919 IPR036397 GO:0003676
Tsu06g02882 953 Gene3D - 23 137 - -
Tsu06g02882 953 PANTHER DISEASE RESISTANCE PROTEIN RP 339 663 IPR044974 GO:0006952
Tsu06g02882 953 PANTHER DISEASE RESISTANCE PROTEIN RP 44 336 IPR044974 GO:0006952
Tsu06g02882 953 CDD RX-CC_like 26 137 IPR038005 -
Tsu06g02882 953 SUPERFAMILY L domain-like 324 595 - -
Tsu06g02882 953 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 359 IPR027417 -
Tsu06g02882 953 Pfam NB-ARC domain 177 334 IPR002182 GO:0043531
Tsu06g02882 953 SUPERFAMILY RNI-like 565 755 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02882 Tsu-Chr6 37937800 37946472 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02882 650 757 WRKY Transcription Factor Family AT4G12020 35.185 1.24e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02882 - - mtr:MTR_6g052455 472.626