Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02859 ATGTTTCGTTTGTTCTTATTTGCTTTTATCATTCCCTTTGTAGTGTTGAGAGTTGATGAAGCTAATGCTCAACTTTACAAAAAAGTGGGAAAACATATCTTACCTTATTCGACAATATTTGTCGATCAATCCGGCCGTCACGGGAGCTTCTCAACCATTCAATCTGCCATTGATTCGATACCTTCGAACAATAATCGTTGGATTTCCATTAGAGTCAATCCCGGTACTTATAGAGAAAGAATAAATATTCCAGTGGATAAACCTTACATTATATTGAAAGGAtcaggaaaaagaaaaactattgtTGAGTGGAATGATCATAGTTCAACCGATCAAAGTCCTACATTCTCATCATTTGCAGATAATATTGTTGTCAAATCCATAAGTTTCAGGAATACATACAATGAAGCAAATAATGGTGTCCATGTAGCTGCTGTAGCTGCAATGATAAGTGGTGATAAGAGCTATTTTTTTAGAGTTGGTTTCTACGGTTATCAAGACACTTTGTGGGACGATAGAGGAAGACACTATTACAAGCTTTGTACCATACAAGGTGCAGTTGATTTTATCTTTGGTGAAGCTCAATCTTTGTTCGAGAGGTGCTCCATATCTGTTATTGGTGGTGGTTTTATAACAGCACAAGGTAGAGATGATCCAAATGAGGAAGGAGGGTTTGTTTTCAAAGATTGTCATGTGTTTGGAAATGCAACAACTTATTTGGGAAGGCCTTGGAGAAAATATGCTAGAGTCTTATTTTATAATTCCAACCTTACCAACATTGTTGCACCTAGTGGTTGGAACCCATGGAATCATGATGGGAATGAGGATCTAACAACATTTGCAGAGTATGGTAATTTTGGAGCTGGTTCAGATACATCCAAGAGAGTGAGTTGGGCTAAGAAATTGGATTTAGCAACAGTTGAACATATGGCAAGTGTGAACTTCATCAACAAACCAGAACAATGGATTGGTTATCAACCATTCTAA 987 0.3647 MFRLFLFAFIIPFVVLRVDEANAQLYKKVGKHILPYSTIFVDQSGRHGSFSTIQSAIDSIPSNNNRWISIRVNPGTYRERINIPVDKPYIILKGSGKRKTIVEWNDHSSTDQSPTFSSFADNIVVKSISFRNTYNEANNGVHVAAVAAMISGDKSYFFRVGFYGYQDTLWDDRGRHYYKLCTIQGAVDFIFGEAQSLFERCSISVIGGGFITAQGRDDPNEEGGFVFKDCHVFGNATTYLGRPWRKYARVLFYNSNLTNIVAPSGWNPWNHDGNEDLTTFAEYGNFGAGSDTSKRVSWAKKLDLATVEHMASVNFINKPEQWIGYQPF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02859 328 ProSitePatterns Pectinesterase signature 2. 183 192 IPR033131 -
Tsu06g02859 328 Pfam Pectinesterase 47 316 IPR000070 GO:0030599|GO:0042545
Tsu06g02859 328 Gene3D - 36 326 IPR012334 -
Tsu06g02859 328 SUPERFAMILY Pectin lyase-like 36 324 IPR011050 -
Tsu06g02859 328 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 3 327 - -
Tsu06g02859 328 PANTHER PECTINESTERASE 10-RELATED 3 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02859 Tsu-Chr6 37572470 37577302 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02859 50 275 Carbohydrate Esterase AT2G19150 48.511 1.30e-76 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02859 - - gmx:100819252 436.417