Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02855 ATGGCCAATAATCATTGGGATTTCTATTCTATCTTGTCGAGCAACAAAGTTAACACCTTTACTAATCCTACGacaatttttgaaatttcaactCCATCTCAAACTTCAACCACCATAACCACCGCCGATAACATAATTTCACCTCAAAACACCACACCATCTTACTTTAATGATTTCAATCTTACCAAGGAAAATAACACAGTCCCTCCATTCTCACTTAAACCAACTGATTTTATAGATCTAGAACTATTAAAAATCAACTTCAATCATAACCCCACCATCTCGACACCAACTACCACCATGCACACCCCCACCATCAACACCTTAACTACCCCCACCACCACCATTATTCCGACCATTAGTACCCCTGCCCACACCACCCTTATCCCTGTGCCCTCTTCCCCCACTAccatcatcaccaccaccaccaccactaccCCCACCCATATGTCTATTGTCATCACTAATACTAGTGTTCAATACTCCAGTACAAATTCTACCTTATTTGATTATCCTATAATCATTGAACAACAACAAATCCAATCAAACGAGTTCACTGGATTAGACAAAATGCTCTTCAAGTACAATTCCACCATCACTACCACCACAGATACCATCTTCACTCTCCCCACTACCACTACCTTCACAATCCCCACTCCCACAACCACTATCCCCACCCAAACCACTGCCATCACCACTACTATCCCTACCATAACAACAATGACTAACACAAACACTAGTTTTCATGGTAccaatcaaaatgttatctcaTCTGATTTTCCAATATTGATCAATCAGCAACAAattcaacaaaacaacaaatatcAAGTTTTTGTTCCCCATTCTTGCATCAAAATCACAACTACTCCTTTTGATGGCGCATACAACCAACCATTAGTTCTACAACAACCAATTGAACATCCACAACAAACAAATTCTAGATCAAGGAAAAGAATTTATAAATATAGGGAGACAGTCGAGTGTCATGTGAGTGAAGATGAACTCTCAAAAGATTTGAGGGCGTGGCGAAAATATGGTGAAAAAACCATTAAAGGGTCTCCACATCGAAGGAAAAGCTTCAACAAAGATGATTTATGCTTAGCTATGAGATCTGAGGGCTCTGCATTTTTGTGA 1134 0.3686 MANNHWDFYSILSSNKVNTFTNPTTIFEISTPSQTSTTITTADNIISPQNTTPSYFNDFNLTKENNTVPPFSLKPTDFIDLELLKINFNHNPTISTPTTTMHTPTINTLTTPTTTIIPTISTPAHTTLIPVPSSPTTIITTTTTTTPTHMSIVITNTSVQYSSTNSTLFDYPIIIEQQQIQSNEFTGLDKMLFKYNSTITTTTDTIFTLPTTTTFTIPTPTTTIPTQTTAITTTIPTITTMTNTNTSFHGTNQNVISSDFPILINQQQIQQNNKYQVFVPHSCIKITTTPFDGAYNQPLVLQQPIEHPQQTNSRSRKRIYKYRETVECHVSEDELSKDLRAWRKYGEKTIKGSPHRRKSFNKDDLCLAMRSEGSAFL 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02855 377 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 135 357 - -
Tsu06g02855 377 Pfam WRKY DNA -binding domain 338 361 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu06g02855 377 ProSiteProfiles WRKY domain profile. 331 377 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu06g02855 377 SUPERFAMILY WRKY DNA-binding domain 331 358 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu06g02855 377 SMART WRKY_cls 336 377 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu06g02855 377 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 135 357 IPR044810 GO:0003700
Tsu06g02855 377 Gene3D WRKY domain 317 373 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02855 Tsu-Chr6 37523868 37533693 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02855 314 370 WRKY Transcription Factor Family AT5G52830 49.153 4.92e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu06g02855 WRKY 0.00014 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02855 K13425 - mtr:MTR_8g069935 182.185