Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02841 ATGGCGGGTGCTACAGGAAGAACCCTCTTcactctctcttcttctctcactACACGCATTTCACGTCATGGTAACCGTTTCTCATTCCTCACACTCTCAAATCCATTAACCCTTCTTCCACGATTCAGACCACTCTGTTCCTTAACCGCCACACCTGAACCCTTATTAGACACTGACATAGAAAAACATTCGATTCTTCTCGAGAAGCTCAGAGTAAGACACCTAAAAGGAActactagtagtagtagtagtagtacgAAAGTTTCTGAAACTGTGAAGAAATCTGAGGTGAagaaggttgttgttgttgatgaagttGTTGAGAGTTTTGATGAATTGGGAATTAGTGATGAGGTTATGGGTGCTGTGAAAGAAATTGGTATTGAAGTTCCTACTGAGATACAGTGTATTGGTATTCCTGCTATTTTGGATGGTAAAAGTGTTGTTTTAGGGTCTCATACTGGTTCTGGAAAAACTCTTGCTTATTTGCTTCCACTTATTCAGTTGCTAAGACGGGATGAGGAATTGAACGGAATAGTGCTGAAGCCCAAGCGTCCCCGAGCTGTTGTGCTATGTCCTACAAGGGAGTTGTCTGAGCAGGTTTTCCGAGTTGCTAAATCGATAAGCCATCATGCACGATTCAGGTGTACCATGGTAAGTGGTGGTGGCCGTCTTAGGCCTCAGGAGGATTCGCTTAATAACCCTGTCGATATGGTGGTTGGTACCCCTGGCAGGATTCTTCAACATATCGTGGAGGGAAATATAGTATATGGTGACATCCAATACGTGGTATTAGATGAGGCTGACACGATGTTTGATCGGGGCTTTGGTCCTGATATTCGCAAATTCCTGGACCCATTAAAACACCGTGCTTCTAAACCTGATAGCCTAGGTTTCCAGACTGTTTTGGTCACTGCGACCATGACAAAGGCTGTGCAAAATCTGGTTGATGAGGAGTTTCAAGGTATTGTGCATTTGCGCACATCCACGTTGCATAAAAAGATTTCTTCTGCGCGTCATGATTTTCTTAAACTTTCTGGTTCTGAGAACAAGATGGATGCATTACTTCAGGTATTAGAGCCAAGTCTTGCAAAGGGTAACAGGGTAATGGTTTTCTGCAACACATTAAATTCTAGCCGTGCTGTGGATCACTTTCTTGGTGAAAATCAGATTTCTACCGTCAATTACCATGGAGAGGTACCGGCGGAGGAAAGGGTTGAAAATCTCAACAAGTTTAAGAGTAACAATGAAGATTGCCCTACATTGGTTTGCACGGACTTGGCTGCTAGGGGTCTGGACTTGGATGTAGACCATGTTATCATGTTTGACTTCCCTTTGAATTCTATCGATTACCTCCATCGCACAGGTAGAACTGCTCGTATGGGAGCAAAAGGGAAAGTAACAAGTTTGGTTACTAAAAAGGACTATAGCTTGGCAACCAAAATAGAGGAGGCAATAAGAAAGAATGAGAGTTTGGAGGCTATCACTAAAGAAAGTGTCCGAATGGACGTAACCAGGAACCAAATCACTGAGCAgagaagaaagaacaaaaatgtGTTTAAAACTTCAAAAGTTAGGGACAGATCTGATTCTCGTGCAAGTCCTGTGAATACCAGGTCAGCTACTAGGGACAAATCTGATTCTCGCACCCGTTCTGAGAATACCAGGTCAGGTAATAGGGACAAATCTGATTCTCGCACCCGTTCTGAGAATACCAGGTCTGGTAGTAGGGACAGATCTGATTCCCGCACCCGTTCTGAGAATACCAGGTCAGGTAGTAGGGACAAATCTGATTCCCGCACCCGTTCTGATAATACCAGGTCAGGTAGTAGGGACAAATCTGATTCCCGCACCCGTTCTGAGAATACTAGGTCAGGCAGTAGGGACAAATCTGATTCTCGCACCCGTTCTGAGAATACCAGGCCAGGTACGAAATCTGGTAAACAATCAGCATCATCAAAGTTTACGAAGACAGGATTTCCCGTTTCAAAACCTGTAAAATCTTCCAGTAAAAAAGCTTCTTCAGAGAATAAGCGAACGGATAAAAGGACCAATGCCACCAAATCTACAGATTCTAAACTTAGTGTTGTTGGGTTTAGGGGGCGGAATGCATCATCCTCAGATAAGAGACAAACATCTTAG 2142 0.4192 MAGATGRTLFTLSSSLTTRISRHGNRFSFLTLSNPLTLLPRFRPLCSLTATPEPLLDTDIEKHSILLEKLRVRHLKGTTSSSSSSTKVSETVKKSEVKKVVVVDEVVESFDELGISDEVMGAVKEIGIEVPTEIQCIGIPAILDGKSVVLGSHTGSGKTLAYLLPLIQLLRRDEELNGIVLKPKRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGGRLRPQEDSLNNPVDMVVGTPGRILQHIVEGNIVYGDIQYVVLDEADTMFDRGFGPDIRKFLDPLKHRASKPDSLGFQTVLVTATMTKAVQNLVDEEFQGIVHLRTSTLHKKISSARHDFLKLSGSENKMDALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPAEERVENLNKFKSNNEDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVTKKDYSLATKIEEAIRKNESLEAITKESVRMDVTRNQITEQRRKNKNVFKTSKVRDRSDSRASPVNTRSATRDKSDSRTRSENTRSGNRDKSDSRTRSENTRSGSRDRSDSRTRSENTRSGSRDKSDSRTRSDNTRSGSRDKSDSRTRSENTRSGSRDKSDSRTRSENTRPGTKSGKQSASSKFTKTGFPVSKPVKSSSKKASSENKRTDKRTNATKSTDSKLSVVGFRGRNASSSDKRQTS 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02841 713 CDD SF2_C_DEAD 339 471 - -
Tsu06g02841 713 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 108 136 IPR014014 GO:0003724
Tsu06g02841 713 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 139 326 IPR014001 -
Tsu06g02841 713 Pfam Helicase conserved C-terminal domain 351 462 IPR001650 -
Tsu06g02841 713 MobiDBLite consensus disorder prediction 689 713 - -
Tsu06g02841 713 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 31 538 - -
Tsu06g02841 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 474 IPR027417 -
Tsu06g02841 713 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 31 538 - -
Tsu06g02841 713 CDD DEADc 119 318 - -
Tsu06g02841 713 MobiDBLite consensus disorder prediction 671 688 - -
Tsu06g02841 713 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 351 503 IPR001650 -
Tsu06g02841 713 MobiDBLite consensus disorder prediction 506 713 - -
Tsu06g02841 713 Gene3D - 70 327 IPR027417 -
Tsu06g02841 713 SMART ultradead3 127 336 IPR014001 -
Tsu06g02841 713 Pfam DEAD/DEAH box helicase 132 315 IPR011545 GO:0003676|GO:0005524
Tsu06g02841 713 SMART helicmild6 380 462 IPR001650 -
Tsu06g02841 713 MobiDBLite consensus disorder prediction 542 641 - -
Tsu06g02841 713 MobiDBLite consensus disorder prediction 642 670 - -
Tsu06g02841 713 Gene3D - 337 568 IPR027417 -
Tsu06g02841 713 MobiDBLite consensus disorder prediction 507 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02841 Tsu-Chr6 37389127 37398227 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02841 105 484 Eukaryotic Initiation Factors Gene Family AT3G19760 28.906 6.53e-41 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02841 - - mtr:MTR_6g039840 1014.99