Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02840 aTGAAAAGAAGAATCAGAGAGTTTCTAACCCTATGTTTTTCATCTCTACACTCTCAAAATCACCACAAACCACTCTCAAAATCACTACAACCCACATCATCTTTTCAAAACTCATCAACAACTTTCTCAACATTTTCCAAAACCCAAAGAGATTCAATGATTTTGGAAAAgtttaaagaaagaaaactcAAAGGGTCATCAAAGGGTGACATAAAAGATTCAACTTTTTTAGTTCCATCAAGTTTTGATACTAATGTTGAGAAAATGGCTCAAAAGGGTTTGAAAAATGAGAGTGAAAATAATACTGTGGTTGTTGGGAATTTTAAGGAGTTGGGTTTGAGTGAAGTGCTTGTTGAGGTTATGGATGAGATTGGTGAGTTTGTACCAAGTGAGATACAGTGTGTTGTTATTCCAACTATTTTGGAAGGGAAGAGTTTGTTGTTGAGTTCACCTTCTCAACATGATAGGACTTTGGCTTACTTGTTGCCTCTTATTCAGCTGCTAAGACGGGATAGAGAGTTGCTTGGTTCGAATTCAAAGCATCCTCAAGCTGTCGTGCTTTGTGCTTCAGAGGAGAAAACTGAACAGTGCTTTAATGCTGCAAGATATATCATTAATAACGCAGAATTGAAGTCTACAAAGAATTGTGCTTCATCAGATGCCGAAAAGTCAAattcttcaattggcttaatGATTGGAACCCCTTCTGAAATTCTTCAATATATTGAAGAGGGGATTATTGTTCCTGCTGAATTAAAATACTTGGTATTTGATGAAGCGGATTCCATGCTTGGTAGCAATCTTGGTCCTGAAATCCATAAAATTATCAGACCATTACAACATCGTGACTCAAAATCCAATGTCAAAAGATTACAAACAATTTTGGCAATTTCTACTATAGCTGAGGTTTTAGGTGAAAAATCGCCCGTTGTAAAACGTCTTGAGCGTGATCATGCCGGAAATATTTCTGCTTTGTCGATAGAAATGGAGGAAACAGAAGTTTTTCATTTGACAGAGTCTCTTGATGCTCTTAGGAAAAAATTGGAGGAGGCAATGGATTCCCTTTAG 1068 0.3567 MKRRIREFLTLCFSSLHSQNHHKPLSKSLQPTSSFQNSSTTFSTFSKTQRDSMILEKFKERKLKGSSKGDIKDSTFLVPSSFDTNVEKMAQKGLKNESENNTVVVGNFKELGLSEVLVEVMDEIGEFVPSEIQCVVIPTILEGKSLLLSSPSQHDRTLAYLLPLIQLLRRDRELLGSNSKHPQAVVLCASEEKTEQCFNAARYIINNAELKSTKNCASSDAEKSNSSIGLMIGTPSEILQYIEEGIIVPAELKYLVFDEADSMLGSNLGPEIHKIIRPLQHRDSKSNVKRLQTILAISTIAEVLGEKSPVVKRLERDHAGNISALSIEMEETEVFHLTESLDALRKKLEEAMDSL 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02840 355 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 137 318 IPR014001 -
Tsu06g02840 355 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 296 IPR027417 -
Tsu06g02840 355 Gene3D - 72 304 IPR027417 -
Tsu06g02840 355 SMART ultradead3 125 323 IPR014001 -
Tsu06g02840 355 Gene3D - 305 355 - -
Tsu06g02840 355 Coils Coil 341 355 - -
Tsu06g02840 355 Pfam DEAD/DEAH box helicase 131 296 IPR011545 GO:0003676|GO:0005524
Tsu06g02840 355 SUPERFAMILY PABC (PABP) domain 302 353 IPR036053 GO:0003723
Tsu06g02840 355 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 244 355 IPR002004 GO:0003723
Tsu06g02840 355 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39-LIKE 7 355 - -
Tsu06g02840 355 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 7 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02840 Tsu-Chr6 37381606 37385473 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02840 290 355 Eukaryotic Initiation Factors Gene Family AT2G23350 42.857 2.60e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02840 - - gmx:100800575 457.988