Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02830 ATGGCGGCAGTTTCATCACCTAAGGCTATGATTCCAGCGGCTTTGAATGGCGGTACCGGCCGATTTGAGAATTCTTCTTTGTATGTTGGTGATCTTGAGGGGAACGTGAATGAGAATCAACTTTATGATTTGTTTAGTCAGATTGCTCAAGTAACTTCCGTTAGGGTTTGTAGGGATCAGACCAAACTATCATCTCTTGGTTATGCTTATGTCAACTTCACCAGCGTTCATGATGCTATTAATGCGATGAAACAGTTTAATTTTACTCCTTTAAATGGGAAGCCTATCCGTATTATGTTTTCTCATCGAGATCCTAGCATTCGGAAAAGTGGATTTGCAAATGTGTTTATTAAGAATCTGGACACATCAATAGATAACAAGGCTCTTCATGATACTTTTGCTTCCTTTGGAACTGTGCTTTCATGTAAGGTAGCACTTGATAGCAATGGTGAATCAAGGGGCTATGGTTTTGTACAATTCGATTCGGATGAGTCTGCACAAAATGCCATTGAAAAATTGGATGGCATGTTGATCAATGATAAGAAAGTTTATGTTGGACATTTTATTCGGCACCAAGTAAGGCCAGCAAATGGATCGCCTAAGTTCACTAATGTATATGTAAAAAACCTTTTTGAAACATATACCGATGAGGACCTTAAGAACCTATTCGACACTTATGGTTTAATAACAAGTGTTGTGGTCATGAAAGATGAGAATGGAAACTCCAAATGTTTTGGTTTCGTGAATTTCCAAAGCCCGGATTCTGCAGCTGTCGCAGTTGAGAGGTTGAATGGGACCACAACCGATGATGGGAAGGTTTTATTTGTTGGTAGAGCTCAAAGGAAATCGGAAAGGGAGGCAGAATTGAAAGCCAAATTTGAGCaagaaaagatgaaaaaatttgaaaaattaaaaggtGCAAATTTATATGTGAAAAACATTGATGACAACATTAATGATGAAAATTTGAAGGGGCATTTTTCTAGTTTTGGAACAATAACTTCTTGCAAGGTAATGCATGATGTTGATGGCCGTAGCAAGGGCTACGGTTTTGTTGCTTTTTCAACTCCGGAGGAAGCAAGTAAAGCTATGATTGAAATGAACGGAAAGATAATTGAACAGAAGCCGCTATATGTTGCTGTGGCTGAGCGCAAAGAACAAAGGAAAGCCCGTTTGCAAGCTCGATTTTCTCAAATTCAAGCAATGGGAGGAATCGCACCTATGCCTGCAGGAATTGTCGGATATCATCCAGGTGCCCAAAGAATTGCTCctcaacaattgtattttggTCAAGCTACACCTGGTGTCATGTCACCTCAGCCAGCTGGATACGGTTTCCAGCAACCGTTCATGCCAAGTATGCAATCGAGTGTTGCTCCAAATTTCACCATGCCATACCACCATCAGCGGCAGGGTCATCTTGGGCACAGGATGGCTGGGCGTCGAGTTGGTAACTTCCAACAGGTGCAGCAGAACCAGTTGCTACCTCGTAACTCCAACCAAAGGGTTAGATATAATGGTCGAAATGGAAATGATCCATCTGTCGTCGATCCTAAAGGTCTCGTGGGTCAAATGATGGTTCCACCTGTAGTTGTTGCACCTCCTACCGACAATCAGCTCCATGGTGCATTGTCTAACAAGTCACTTTCTTCGACTTTGGCTTCTTCTCCGCCAGAAATTCAACATAtgATGTTGCGTGAACATTTATTTCCGTTAGTAAGTCGTCTTACATCAAATTATCAGGCAGCGAAGGTCACAGAAATGTTGCTGGAAATGGACCAATCAGAGGTAATCCATTTGATTGAGTCACCTGAAGAATTGAAGATAAAGGTGTCGGAAGCAATGAAGGTCCTTCGTGATGCACCGAGTTCTGAAACTGGTGATGGCATTATAAGTGAATGA 1902 0.408 MAAVSSPKAMIPAALNGGTGRFENSSLYVGDLEGNVNENQLYDLFSQIAQVTSVRVCRDQTKLSSLGYAYVNFTSVHDAINAMKQFNFTPLNGKPIRIMFSHRDPSIRKSGFANVFIKNLDTSIDNKALHDTFASFGTVLSCKVALDSNGESRGYGFVQFDSDESAQNAIEKLDGMLINDKKVYVGHFIRHQVRPANGSPKFTNVYVKNLFETYTDEDLKNLFDTYGLITSVVVMKDENGNSKCFGFVNFQSPDSAAVAVERLNGTTTDDGKVLFVGRAQRKSEREAELKAKFEQEKMKKFEKLKGANLYVKNIDDNINDENLKGHFSSFGTITSCKVMHDVDGRSKGYGFVAFSTPEEASKAMIEMNGKIIEQKPLYVAVAERKEQRKARLQARFSQIQAMGGIAPMPAGIVGYHPGAQRIAPQQLYFGQATPGVMSPQPAGYGFQQPFMPSMQSSVAPNFTMPYHHQRQGHLGHRMAGRRVGNFQQVQQNQLLPRNSNQRVRYNGRNGNDPSVVDPKGLVGQMMVPPVVVAPPTDNQLHGALSNKSLSSTLASSPPEIQHMMLREHLFPLVSRLTSNYQAAKVTEMLLEMDQSEVIHLIESPEELKIKVSEAMKVLRDAPSSETGDGIISE 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02830 633 Gene3D - 307 402 IPR012677 -
Tsu06g02830 633 CDD RRM1_I_PABPs 26 105 - -
Tsu06g02830 633 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 281 IPR000504 GO:0003723
Tsu06g02830 633 Gene3D - 113 187 IPR012677 -
Tsu06g02830 633 PANTHER RNA BINDING PROTEIN 19 624 - -
Tsu06g02830 633 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 183 IPR000504 GO:0003723
Tsu06g02830 633 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 377 IPR000504 GO:0003723
Tsu06g02830 633 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 270 IPR000504 GO:0003723
Tsu06g02830 633 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 97 IPR000504 GO:0003723
Tsu06g02830 633 CDD RRM3_I_PABPs 202 282 - -
Tsu06g02830 633 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 545 623 IPR002004 GO:0003723
Tsu06g02830 633 SMART rrm2_1 204 276 IPR003954 GO:0003676
Tsu06g02830 633 SMART rrm2_1 308 380 IPR003954 GO:0003676
Tsu06g02830 633 SMART rrm2_1 26 99 IPR003954 GO:0003676
Tsu06g02830 633 SMART rrm2_1 114 186 IPR003954 GO:0003676
Tsu06g02830 633 Gene3D - 20 112 IPR012677 -
Tsu06g02830 633 Coils Coil 284 304 - -
Tsu06g02830 633 SMART poly_2 557 621 IPR002004 GO:0003723
Tsu06g02830 633 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 25 619 IPR006515 GO:0003723
Tsu06g02830 633 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 185 IPR000504 GO:0003723
Tsu06g02830 633 Gene3D - 196 305 IPR012677 -
Tsu06g02830 633 SUPERFAMILY RNA-binding domain, RBD 194 286 IPR035979 GO:0003676
Tsu06g02830 633 SMART rrm1_1 114 186 IPR000504 GO:0003723
Tsu06g02830 633 SMART rrm1_1 308 380 IPR000504 GO:0003723
Tsu06g02830 633 SMART rrm1_1 26 99 IPR000504 GO:0003723
Tsu06g02830 633 SMART rrm1_1 204 277 IPR000504 GO:0003723
Tsu06g02830 633 PANTHER POLYADENYLATE-BINDING PROTEIN 19 624 - -
Tsu06g02830 633 Gene3D - 543 622 - -
Tsu06g02830 633 Coils Coil 382 402 - -
Tsu06g02830 633 Pfam Poly-adenylate binding protein, unique domain 553 618 IPR002004 GO:0003723
Tsu06g02830 633 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Tsu06g02830 633 SUPERFAMILY PABC (PABP) domain 497 625 IPR036053 GO:0003723
Tsu06g02830 633 CDD RRM4_I_PABPs 306 384 - -
Tsu06g02830 633 CDD RRM2_I_PABPs 111 187 IPR045305 -
Tsu06g02830 633 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 384 IPR000504 GO:0003723
Tsu06g02830 633 SUPERFAMILY RNA-binding domain, RBD 24 191 IPR035979 GO:0003676
Tsu06g02830 633 SUPERFAMILY RNA-binding domain, RBD 304 397 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02830 Tsu-Chr6 37314861 37335476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02830 24 619 Eukaryotic Initiation Factors Gene Family AT1G71770 53.125 0.0 605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02830 K13126 - gmx:100783163 849.351