Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02820 ATGGATTTCAATGATGGCTATGTCTCAAAAGAGCACCTCGAGCTTCATCGATCTGCAGCCGAAAGTGTTGATCCAGTATCAGTTTCTCCTTTGCAACTTTCTCCTCCAAAGTCACCAAAGTCACCTAAATCTCCACGGTCTCCAAAGGCGCAAGTTAAGGGCAGCAATTTAAGTCCAAAACATTATAAGCAATCACATTCATCGAAAGATGGACGTCCAAAGAAAGGTGGCTCTGGAGGTAAAGGAACCTGGGGTGGATTGCTAGATACAGATGACGGAAACTCTCTTGACCCCAATGACCCAAACTATGACAGCACTGAGGAATATGATGATTtaactgaaaagaaaaagaacataGCATTGGAAGAGTACAAGAAAAAAGCTACTATAATAGTGGAAGAATACTTTGCAACTGATGATGTTGTTGCAACAATGACTGAACTTAGAGAAGTTGGAAAACCAGAATACAGCTACTATTTTGTCAAAAAGCTTGTCTCAATGTCAATGGATAGAcatgacaaagaaaaagaaatggcTGCAATTCTCTTATCTGCACTTTATGCCGATGTAATTCACCCGTCACAAGTTTACAAAGGATTCACCAAACTAGTCGAATCGGCTGATGATTTGATCGTAGACATACCAGACACGGTCGATATTCTTGCGCTTTTCATAGCTAGAGCTGTGGTTGACGACATTCTTCCACCGGCATTTTTGAAGAAACAGATAGCAAACTTAGCAGATGATTCTAAAGGAGCTGAGGTTTTAAAGAAAGCTGAGAAAAGCTATCTAACAGCACCTTTACATGCCGAAATCATCGAGCGGCGTTGGGGAGGTAGTAAGAATACAACGGTTGATGATGTGAAAGCAAGGATAAACAATTTCTTGAAAGAATATGTAGTAAGTGGTGACAAGAAAGAAGCTTTTAGATGCATCAAGGACTTAAAAGTTCCTTTCTTCCATCATGAAATAGTGAAAAGAGCTCTTATAATGGCAATGGAAAGGCGACAAGCGGAAACGCCGTTACTAGACTTATTGAAAGAAGCAGCTGAAGAAGGTTTCATCAACACAAGCCAAATGTCAAAAGGGTTCAGCAGGTTGATTGAAACAGTCGACGATTTATCGCTGGACATACCAAACGCGCGCGGAATACTCCAACAACTAATGGCGAAAGCCGCATCCGATGGTTGGTTATGTGTTTCATCACTAAAATCGCTTACCATTGAACCTGAAAAGAACACAATACAAGAAAACGTTGCACGGAGTTTCAAGATGAAAACACAATCCATCATTCAAGAGTACTTTTTATCAGGtgatatatttgaagtaaatagTTGTTTAGAACAAGAGAATAACAAACACTGTGGTGAACTAAATGCAATCTTTGTTAAGAAGCTAATAACTTTAGCAATGGATAGAAAGAATCGAGAAAAAGAAATGGCTTCGGTGTTACTTTCATCGCTTTGTTTTCCACCTGATGATGTTGTGAATGGTTTTGTGATGCTTATTGAATCAGCACATGATACTGCATTAGACAATCCTGTTGTTGTTGAAGATCTTGCAATGTTTCTAGCGAGATCAGTAGTTGATGAAGTTTTAGCGCCGCAACAACTTGTAGATATAGGAACACAATGTTTAAGTCAAGATTCAATTGGAAACAAAGTGCTTTTAATGGCTAAGTCATTACTAAAAGCAAGATTAGCTGGTGAAAGAATCTTGAGATGTTGGGGAGGGGGTGGAAGTAGCAAACCAGGATGGGAAATCGAAGATGTTAAAGATATGATCGGAAAATTGTTGGAAGAATATGAATCTGGTGGTGATATAAGAGAAGCTTGTAGATGCATGAAAGAGTTAGGAATGCCATTTTTTCATCATGAAGTTGTTAAGAAAAGTTTGGTGaaaattattgaaaagaaaaatgaaagattATGGGGTTTACTTAAAGAATGTTTTGATTCTGGATTAATAACTATGAATCAAATGGTTAAAGGTTTTGGAAGACTTGAAGAAACTCTTGATGATTTAGCTTTGGATGTTCCTGATGCTAAGAATCAATTTGGATTTTATGTTGAAAAGGCAAAGAATGAAGGATGGTTGGATAGTTCATATTGTTTCAACAATGCTATAGAGAATGGCAAATGCTAA 2145 0.3688 MDFNDGYVSKEHLELHRSAAESVDPVSVSPLQLSPPKSPKSPKSPRSPKAQVKGSNLSPKHYKQSHSSKDGRPKKGGSGGKGTWGGLLDTDDGNSLDPNDPNYDSTEEYDDLTEKKKNIALEEYKKKATIIVEEYFATDDVVATMTELREVGKPEYSYYFVKKLVSMSMDRHDKEKEMAAILLSALYADVIHPSQVYKGFTKLVESADDLIVDIPDTVDILALFIARAVVDDILPPAFLKKQIANLADDSKGAEVLKKAEKSYLTAPLHAEIIERRWGGSKNTTVDDVKARINNFLKEYVVSGDKKEAFRCIKDLKVPFFHHEIVKRALIMAMERRQAETPLLDLLKEAAEEGFINTSQMSKGFSRLIETVDDLSLDIPNARGILQQLMAKAASDGWLCVSSLKSLTIEPEKNTIQENVARSFKMKTQSIIQEYFLSGDIFEVNSCLEQENNKHCGELNAIFVKKLITLAMDRKNREKEMASVLLSSLCFPPDDVVNGFVMLIESAHDTALDNPVVVEDLAMFLARSVVDEVLAPQQLVDIGTQCLSQDSIGNKVLLMAKSLLKARLAGERILRCWGGGGSSKPGWEIEDVKDMIGKLLEEYESGGDIREACRCMKELGMPFFHHEVVKKSLVKIIEKKNERLWGLLKECFDSGLITMNQMVKGFGRLEETLDDLALDVPDAKNQFGFYVEKAKNEGWLDSSYCFNNAIENGKC 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02820 714 ProSiteProfiles MI domain profile. 590 709 IPR003891 -
Tsu06g02820 714 Pfam MA3 domain 125 235 IPR003891 -
Tsu06g02820 714 Pfam MA3 domain 592 700 IPR003891 -
Tsu06g02820 714 Pfam MA3 domain 289 398 IPR003891 -
Tsu06g02820 714 Pfam MA3 domain 423 533 IPR003891 -
Tsu06g02820 714 PANTHER MA3 DOMAIN-CONTAINING PROTEIN 1 709 - -
Tsu06g02820 714 SUPERFAMILY ARM repeat 421 580 IPR016024 -
Tsu06g02820 714 Gene3D - 411 566 - -
Tsu06g02820 714 Gene3D - 112 264 - -
Tsu06g02820 714 SUPERFAMILY ARM repeat 284 405 IPR016024 -
Tsu06g02820 714 SUPERFAMILY ARM repeat 117 281 IPR016024 -
Tsu06g02820 714 SUPERFAMILY ARM repeat 586 705 IPR016024 -
Tsu06g02820 714 ProSiteProfiles MI domain profile. 422 543 IPR003891 -
Tsu06g02820 714 ProSiteProfiles MI domain profile. 123 244 IPR003891 -
Tsu06g02820 714 MobiDBLite consensus disorder prediction 18 111 - -
Tsu06g02820 714 MobiDBLite consensus disorder prediction 44 62 - -
Tsu06g02820 714 Gene3D - 574 706 - -
Tsu06g02820 714 Gene3D - 274 406 - -
Tsu06g02820 714 ProSiteProfiles MI domain profile. 287 408 IPR003891 -
Tsu06g02820 714 PANTHER PROGRAMMED CELL DEATH 4 1 709 IPR039778 GO:0045892
Tsu06g02820 714 SMART ma3_7 591 700 IPR003891 -
Tsu06g02820 714 SMART ma3_7 423 534 IPR003891 -
Tsu06g02820 714 SMART ma3_7 288 399 IPR003891 -
Tsu06g02820 714 SMART ma3_7 124 235 IPR003891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02820 Tsu-Chr6 37101644 37104946 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02820 598 687 Eukaryotic Initiation Factors Gene Family AT4G30680 33.333 2.60e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02820 - - lang:109352315 1115.14