Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu06g02802 | ATCTACATCAAAGGCAATGTATGATTCACTCTGTGCTACATATGATGGGAAtaagcaagttcagaatgctAAAGCAAGACTCTTAGTTCAACAGTATGAACTTTTCACAATGAAGCCAGATGAAGATATTGAGACTATGTTCTCtaggtttcagactctggtaTCAAACCTCAGAGTTCTCAAGAAAAGTTATACTACCTCTGAccatgtgtggaagattctgaatAGCTTGACAGATAAGTGGAGACCAAAGGTCACAGCTATAGAGGAAGCAAAAGATCTTGAGAGTATTAGTCTTGAATCTCtaatcagcaatctcaagagccatgagttggtattgaacgctgatgtagctaagaagaaggaaagAAGCTTCAAAGGAAACAACTCGAGGAATAGTGGtagtaaagaagaaaagaattgcttcaagtgcaagaaacctGTATACTTCATTGCAGATTGTCCAGAAGCTTCACCAAAAGACAAAAGCAAGAAGTTCAGTAGTAAAATAGAAAACTTCAGAAGAAAGTtaaagaagagtttaatggccGCATTTGAAAACTTGGAGATGTCttctgaagaggatgatgaagaagccAATGTAGCACTTATGGCTGAAGCAGATTCTGATGCTGATTCAGAACAAGAgacagactctgaaggatcagataATGAAGAAAGCGAAGAGgAGGCAATGCATGGGACTGAAGTTGCTGGAAATAATGACTGCCCTgtaaaaattaaacttgttgCTCCTCCAATTTATGTGTCTACCACTCAGACCATTGAAAAGGTTGGTGCATCATTCACTTAA | 814 | 0.2678 | STSKAMYDSLCATYDGNKQVQNAKARLLVQQYELFTMKPDEDIETMFSRFQTLVSNLRVLKKSYTTSDHVWKILNSLTDKWRPKVTAIEEAKDLESISLESLISNLKSHELVLNADVAKKKERSFKGNNSRNSGSKEEKNCFKCKKPVYFIADCPEASPKDKSKKFSSKIENFRRKLKKSLMAAFENLEMSSEEDDEEANVALMAEADSDADSEQETDSEGSDNEESEEEAMHGTEVAGNNDCPVKIKLVAPPIYVSTTQTIEKVGASFT | 270 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu06g02802 | 270 | Pfam | gag-polypeptide of LTR copia-type | 2 | 113 | - | - | |
| Tsu06g02802 | 270 | PANTHER | - | 2 | 231 | - | - | |
| Tsu06g02802 | 270 | MobiDBLite | consensus disorder prediction | 207 | 230 | - | - | |
| Tsu06g02802 | 270 | Gene3D | - | 133 | 187 | - | - | |
| Tsu06g02802 | 270 | PANTHER | OS06G0684500 PROTEIN | 2 | 231 | - | - | |
| Tsu06g02802 | 270 | MobiDBLite | consensus disorder prediction | 207 | 243 | - | - | |
| Tsu06g02802 | 270 | SUPERFAMILY | eIF-2-alpha, C-terminal domain | 230 | 265 | IPR024055 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu06g02802 | Tsu-Chr6 | 36906892 | 36909853 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu06g02802 | 230 | 261 | Eukaryotic Initiation Factors Gene Family | AT5G05470 | 68.750 | 4.26e-08 | 51.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu06g02802 | - | - | twl:119994770 | 121.324 |