Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02765 ATGTCCTTGTTAACAGTGGCGCATCAAAGAGGTTCAGGTGAGTTCACCGGATTCACGGTGAAGCGCGACGGCGATAGTGATGGTGGTGGAAGTTCTGGTACATCTCAATCATTAAATTTCAACCAAATGCAGAGTAATTCATCAATGGTTTATAACGGTGATAGAGAATTAACACAAATGGTTTCAGCTCTTACACATGTTTCATCATCAGGGTCTAATCAAATGAGTAATAATGAATGGATTCAAAGGAGTGGTTTTCttaattcatcatcttcatcttcttattCTTCTGGTTCTGGTTCTGGTTCTGGTTTTGTTATGTCTTCTGGATCATGGAGTGGTAATAAAAGAGGGCGTGATGAAGAAAGTAGTGGTTCTAATAATCACTTTTTACAACAATCTGTTCCTAAACTTTTTAGAACTGTTATGGTACCTTCTCAAGGACAAGGACAAGGAGAATCTTCATCATCAGTGACTGAAGAAGCTCCAACCACAAGAACAACCATAGCCACCGCCACATCAACAGTAGCGTCATTCGAAGAGTCCGAACAGCCGAAGAGAAGATACAGAGGAGTGAGACAGAGACCATGGGGAAAATGGGCAGCAGAAATAAGAGATCCACACAAAGCACAAAGAGTCTGGCTTGGAACATTTGATACAGCAGAATCTGCAGCAAGAGCTTATGATGATGCTGCATTAAGATTCAGAGGAAGCAGGGCAAAACTTAATTTCCCAGAAAATGTTAGATCAATTATGCCTCCGCCACCGCAACCACAACCACAATCACGACCTCAACCACAGTCACTATCACAACTTCAATCTTTTACGCCAGCTGCGGTTCCTTCTCGGACACCACAGCAGCCGGTTCAAGGTTCATCTGACTTGATTAGAGACTATTTGGAATATTCTCAAATTCTACAAAGTTCTGGTGATTTTCAACTACAACAAatgcagcaacaacaacaattgcAACAACAAGAACATGCTTCTAATTTGGTTCAACAATGGTATTATAATTCACAATTAGCTGCACTTCAATCACATTCAATGttatcaacatcatcatcactttctatACCTTCTAATTTATCACCTCCGATAGCAACAATTTTACCTTCCACTCAATTTTCAACTTCTTCTACTTCATTTCCCCTGTTTTCTAGTCAACAAATGGGATTTTTTGGGGTGCCGGAAAACCGTCCACCACCGCCACCCGGTGGTGGACGTGGTGGCGAAACAGAGTTTCCGCCATCAACATGGTCAGATACTAGTGGGCATCCACCACCACCTTATGGTTGa 1299 0.3988 MSLLTVAHQRGSGEFTGFTVKRDGDSDGGGSSGTSQSLNFNQMQSNSSMVYNGDRELTQMVSALTHVSSSGSNQMSNNEWIQRSGFLNSSSSSSYSSGSGSGSGFVMSSGSWSGNKRGRDEESSGSNNHFLQQSVPKLFRTVMVPSQGQGQGESSSSVTEEAPTTRTTIATATSTVASFEESEQPKRRYRGVRQRPWGKWAAEIRDPHKAQRVWLGTFDTAESAARAYDDAALRFRGSRAKLNFPENVRSIMPPPPQPQPQSRPQPQSLSQLQSFTPAAVPSRTPQQPVQGSSDLIRDYLEYSQILQSSGDFQLQQMQQQQQLQQQEHASNLVQQWYYNSQLAALQSHSMLSTSSSLSIPSNLSPPIATILPSTQFSTSSTSFPLFSSQQMGFFGVPENRPPPPPGGGRGGETEFPPSTWSDTSGHPPPPYG 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02765 432 CDD AP2 188 247 IPR001471 GO:0003700|GO:0006355
Tsu06g02765 432 PRINTS Ethylene responsive element binding protein signature 211 227 IPR001471 GO:0003700|GO:0006355
Tsu06g02765 432 PRINTS Ethylene responsive element binding protein signature 189 200 IPR001471 GO:0003700|GO:0006355
Tsu06g02765 432 SUPERFAMILY DNA-binding domain 188 246 IPR016177 GO:0003677
Tsu06g02765 432 ProSiteProfiles AP2/ERF domain profile. 188 245 IPR001471 GO:0003700|GO:0006355
Tsu06g02765 432 PANTHER DNA-BINDING DOMAIN 52 394 IPR044808 GO:0003700|GO:0009873
Tsu06g02765 432 MobiDBLite consensus disorder prediction 91 114 - -
Tsu06g02765 432 MobiDBLite consensus disorder prediction 15 40 - -
Tsu06g02765 432 MobiDBLite consensus disorder prediction 391 432 - -
Tsu06g02765 432 MobiDBLite consensus disorder prediction 91 129 - -
Tsu06g02765 432 MobiDBLite consensus disorder prediction 244 291 - -
Tsu06g02765 432 MobiDBLite consensus disorder prediction 264 291 - -
Tsu06g02765 432 Gene3D AP2/ERF domain 187 247 IPR036955 GO:0003700|GO:0006355
Tsu06g02765 432 Pfam AP2 domain 188 237 IPR001471 GO:0003700|GO:0006355
Tsu06g02765 432 MobiDBLite consensus disorder prediction 145 166 - -
Tsu06g02765 432 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 52 394 - -
Tsu06g02765 432 MobiDBLite consensus disorder prediction 249 263 - -
Tsu06g02765 432 SMART rav1_2 188 251 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02765 Tsu-Chr6 35978750 35980745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02765 167 249 AP2-EREBP Transcription Factor Family AT2G33710 66.265 1.37e-32 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu06g02765 AP2 1.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02765 - - mtr:MTR_6g037610 467.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02765 06 35978750 35980745 Tsu01g04288 01 50654190 50656254 PCT