Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02756 ATGGCCGAACCTTCCAAAGTCATTCACATTCGGAATGTTGGACATGAGATATCTGAAAATGATTTGCTTCAACTTTTTCAGCCTTTTGGAGTCATAACAAAGCTTGTGGTGCTGCGCCCAAAAAACCAGGCTCTCCTCCAAATGCAAGACATTCCTTCTGCGGTTAGTGCTATACAATATTATGCAAATTCTCAACCAAATATAAGGGGGAGAAATGTTTATGTCCAGTTCTCCTCTCATCGAGAACTAACGACCATGGATCAACAAAGTCAAGGACGAGAGGATGAGCCAAATCGAATTCTCTTAGTTACGGTTCATCAAGTGCTGTATCCCATGACAGTGGATGTGCTACACCAAGTATTTTCTCCCTATGGATATGTGGAAAAGATTGTAACATTTCAAAAGTCAGCTGGTGTTCAAGCTCTCATCCAGTATGGAACTTATCAAAGTGCTGTGACTGCCAGAGGTGCACTTCAGGGACGCAATGTTTATGATGGTTGCTGTCAGATGGACATTCAGTTTTCAAACCTTAATGAGCTACAAGTGAACTACAATAATGATCGTTCCAGGGACTTCACCAATCCATTTCTGCCTACAGAGCAGAAAGGTCGACCTTCACAATCTGGGCATGGTGATGCAGAAATGTATGGTGTTCAACGTTCTGGATCTAGGCAAGGTGGATCCTCACAGATGAGTAATGCTGAAGCAATTGAAGCTGCCTTCGGGGGAAATTTGCCTCCTGGAATAACTGGAACAAATGAAAGGTGTACAATTATTGTCGAAAATCTCGATCCTGATAGAATCGACGAGGATAAGCTGTTCAACTTGTTCTCTATTTATGGTAACATTATGAGGATCATTATTTTCCGAAATAAACCACATTCTGCACTTGTTCAGATGGGGGATGGTTTCCAAGCTGAATTGGCAGTACACTTTCTGAAGGGTGCCATGTTGTTTGGAAAGCAATTGGATGTGAACTACTCAATGTATCTTAACATACCTCAAGGTGCTCATACACGTGAATACGTGAACTCAAATCTCAATCGATTCAATCGCAATGCTGCTAAAAACTATCGATATTGCTGCTCACCGACAAGGATCATCCACGTGTCCTCCCTCCCACAAGACATTACTGAGGATGAGCTTGTAAGTGTTCTAGTGGAGCACGGAATCATTCTCAACTGCAAAGTCTTTGAGATTAATGGGAAAAAGCAGGCTCTTGTTCAGTTTCAGTCCGAGGAGCAGGCAACTGAAGCCCTTGTTTGCAAACATGCAATTTCACTAGCTGGCTCAGTGATACGCATCTCCTTTTCGCAGTTGCAGTTTGCCCAAAATCCGAGACATGTTCATCATAGAATCCCTAATTTCATTGGTGCTTCTCTTGCTCCTGATAAGGGTACAAGGGTTGCTTCAGTGTAG 1419 0.4271 MAEPSKVIHIRNVGHEISENDLLQLFQPFGVITKLVVLRPKNQALLQMQDIPSAVSAIQYYANSQPNIRGRNVYVQFSSHRELTTMDQQSQGREDEPNRILLVTVHQVLYPMTVDVLHQVFSPYGYVEKIVTFQKSAGVQALIQYGTYQSAVTARGALQGRNVYDGCCQMDIQFSNLNELQVNYNNDRSRDFTNPFLPTEQKGRPSQSGHGDAEMYGVQRSGSRQGGSSQMSNAEAIEAAFGGNLPPGITGTNERCTIIVENLDPDRIDEDKLFNLFSIYGNIMRIIIFRNKPHSALVQMGDGFQAELAVHFLKGAMLFGKQLDVNYSMYLNIPQGAHTREYVNSNLNRFNRNAAKNYRYCCSPTRIIHVSSLPQDITEDELVSVLVEHGIILNCKVFEINGKKQALVQFQSEEQATEALVCKHAISLAGSVIRISFSQLQFAQNPRHVHHRIPNFIGASLAPDKGTRVASV 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02756 472 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Tsu06g02756 472 SMART rrm1_1 367 436 IPR000504 GO:0003723
Tsu06g02756 472 SMART rrm1_1 102 171 IPR000504 GO:0003723
Tsu06g02756 472 SMART rrm1_1 257 326 IPR000504 GO:0003723
Tsu06g02756 472 SMART rrm1_1 7 76 IPR000504 GO:0003723
Tsu06g02756 472 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 333 - -
Tsu06g02756 472 Gene3D - 1 98 IPR012677 -
Tsu06g02756 472 Gene3D - 349 452 IPR012677 -
Tsu06g02756 472 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 256 330 IPR000504 GO:0003723
Tsu06g02756 472 SUPERFAMILY RNA-binding domain, RBD 96 196 IPR035979 GO:0003676
Tsu06g02756 472 Gene3D - 253 347 IPR012677 -
Tsu06g02756 472 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 1 442 - -
Tsu06g02756 472 SUPERFAMILY RNA-binding domain, RBD 358 443 IPR035979 GO:0003676
Tsu06g02756 472 MobiDBLite consensus disorder prediction 189 231 - -
Tsu06g02756 472 TIGRFAM hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family 4 439 IPR006536 GO:0003723|GO:0005634|GO:0006397
Tsu06g02756 472 Gene3D - 99 202 IPR012677 -
Tsu06g02756 472 SUPERFAMILY RNA-binding domain, RBD 3 92 IPR035979 GO:0003676
Tsu06g02756 472 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 366 440 IPR000504 GO:0003723
Tsu06g02756 472 MobiDBLite consensus disorder prediction 189 206 - -
Tsu06g02756 472 Pfam RRM-like domain 98 175 IPR021790 -
Tsu06g02756 472 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 60 IPR000504 GO:0003723
Tsu06g02756 472 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 369 433 IPR000504 GO:0003723
Tsu06g02756 472 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 1 442 - -
Tsu06g02756 472 CDD RRM4_PTBPH3 359 437 - -
Tsu06g02756 472 SUPERFAMILY RNA-binding domain, RBD 251 330 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02756 Tsu-Chr6 35908900 35919182 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02756 255 439 Eukaryotic Initiation Factors Gene Family AT1G71770 24.870 7.06e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02756 K14948 - gmx:100798234 717.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02756 06 35908900 35919182 Tsu01g04290 01 50676396 50682038 PCT