Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02731 ATGTCGTTTCGCAGTATTGTTCGTGATGTAAGAGATGGAATTGGAAGTTTATCTATGAGGAGTTTTGAGGTAAGGCTTCCTGGCCATGATAGGGGCAAGTCGAGTAATTTGGTCCATGAGTCGAACGAGCAGCCATGTGTAATAGAGAATAGCCGGTGGGCTAGTCTTCCGTCCGAGCTTCTTTGCGATGTAATTAAGAGGTTGGAAGAAAGTGAGAGTACATGGCCTGCTCGAAAGCATGTTGTTGCCTGTGCTGCTGTCTGCAAATCTTGGAGAGAAATGTGCAAAGAAATTACTAGCAGTGTTGAGTCAAGTGGGAAGATTACTTTCCCGGTTTCACTAAAGCAGCCTGGTTATAGGGATGGACCTATTCAGTGTTTCATCAAGAGAGACAAATCTAATCTTACTTATCACCTATACCTTTGTCTTAGTCCTGCATTGCTTGTTGAAAATGGGAAGTTTCTTCTTTCTGCAAAACGGAGTAGAAGAACAACTTGCACGGAGTACATTATATCAATGGATGCAGATAACATATCAAAGTCTAGCAGCACTTACATTGGAAAACTaagGTCCAATTTTCTTGGcaccaaatttataatttatgataCACAGCCTCCCTATAGCAATGCTCAGCTGCCTCCACCAGGCCGAAGCCGAAGGTTTAATTCAACAAAGGTTTCTCCCAAAGTCCCTACTGGTAACTACAATATTGCCGAGATCACCTATGAGTTGAACGTCCTTGGTACTAGAGGTCCGCGCAGGATGAACTGCATCATGTCCTCGATCCCTATGTCATCCCTTGAGCCCGGTGGAAATGTCCCCGGCCAGCCAGAGCTCCTTCCCTGCACCCTCGATGATTCCTTCCGGACAATATCCTCCTCAAGATCAATCTTCAACTCGTCCGAGTTTGGCAGTTCTAGATTCTCGGACATAGTTGGGACCAGTAATTATGAGGAAGGAAAGGACAAACCTATAATTCTCAAGAACAAATCACCAAGATGGCATGAGCAACTGCAGTGTTGGTGTCTCAACTTCAGGGGCCGGGTGACCGTTGCTTCAGTAAAGAATTTTCAATTGATTGCTTCAACGCAGCCAACAGCAGCGGTTGGTTCTACTCCTACACCGTCTTCTCAGCCGACACAGTCTGATAATGATAAGGTTATTCTTCAGTTTGGAAAAGTTGGCAAGGATATGTTCACTATGGACTATAGATATCCTTTATCTGCATTTCAGGCTTTTGCTATTTGTTTGACTAGCTTTGACACAAAACTAGCATGTGAATAA 1284 0.4354 MSFRSIVRDVRDGIGSLSMRSFEVRLPGHDRGKSSNLVHESNEQPCVIENSRWASLPSELLCDVIKRLEESESTWPARKHVVACAAVCKSWREMCKEITSSVESSGKITFPVSLKQPGYRDGPIQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRSRRTTCTEYIISMDADNISKSSSTYIGKLRSNFLGTKFIIYDTQPPYSNAQLPPPGRSRRFNSTKVSPKVPTGNYNIAEITYELNVLGTRGPRRMNCIMSSIPMSSLEPGGNVPGQPELLPCTLDDSFRTISSSRSIFNSSEFGSSRFSDIVGTSNYEEGKDKPIILKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIASTQPTAAVGSTPTPSSQPTQSDNDKVILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02731 427 Gene3D - 48 101 - -
Tsu06g02731 427 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 1 427 - -
Tsu06g02731 427 Pfam F-box domain 53 98 IPR001810 GO:0005515
Tsu06g02731 427 PRINTS Tubby superfamily signature 345 361 IPR000007 -
Tsu06g02731 427 PRINTS Tubby superfamily signature 405 427 IPR000007 -
Tsu06g02731 427 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Tsu06g02731 427 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Tsu06g02731 427 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Tsu06g02731 427 PRINTS Tubby superfamily signature 384 403 IPR000007 -
Tsu06g02731 427 PRINTS Tubby superfamily signature 327 344 IPR000007 -
Tsu06g02731 427 ProSitePatterns Tub family signature 2. 412 427 IPR018066 -
Tsu06g02731 427 SUPERFAMILY Tubby C-terminal domain-like 103 427 IPR025659 -
Tsu06g02731 427 Pfam Tub family 114 422 IPR000007 -
Tsu06g02731 427 Gene3D Tubby Protein; Chain A 110 427 IPR025659 -
Tsu06g02731 427 ProSitePatterns Tub family signature 1. 345 358 IPR018066 -
Tsu06g02731 427 PANTHER TUBBY-RELATED 1 427 - -
Tsu06g02731 427 SUPERFAMILY F-box domain 44 96 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02731 Tsu-Chr6 35340877 35344727 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02731 1 427 TUB Transcription Factor Family AT1G76900 67.473 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Tsu06g02731 Tub 3.6e-115 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02731 K19600 - qsu:111992792 705.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02731 06 35340877 35344727 Tsu01g04301 01 50789061 50792831 PCT