Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02692 ATGGAAGATTATTGGAACATGATTTGTGGAGACTATGGTTATGATTTCAAGTTAAAAGATCCTTCTTCATGCATCATTAACCATttgtttctcattttctttgatttgttcATGTTAATGATGCTATTAATGATCATGTTCCGAAAGTTTTCCTCGAGACCTGTTTGTGGTCAAGTAAGATATTCAAACTTGCAGCTAGTTTCTGCCATAACCAATGGCTCTGTTGCGTTGTTGCATTTATGCTTAGGAATTTGGGTTTTAGAGGAAACATTGAAGAAAACTCACAAAGCTTTTCCTCTTAACTGGTGGTTACTAGAACTCTTTCATGGCCTCACATGGTTGTTTGTTGCTTGTGCTGCAAGTCTTCAGATAAAACAACTCTCAAGAACATGGATATGGTTATTCTCCATTCTCATCATTTTTGTTTCTGGTGTATTGTGTGCATTATCTGTGTCTTACGCAATTGGCAGCAGAGAGCTATCCCTTAAGGCAACTTTAGATATCATATCTTTTTTAGGAGCATCTTTGCTGCTGCTATGCACTTACAAAACCTGTAAAAGTGACGATGCTTGCAGAGACACATTTGATAGCCAGTTAACCCCATTTGCTAAAGCTGGATTCTTTAGTAAGTTGTCGTTTTGGTGGTTGAATCCGTTGATGAAAAAGGGTCAAGAAAAAACACTTCAAGATGAGGATATCCCAAAGTTAAGAGCGTCTGAACGAGCGGAAAGTTGTTATTTGTCATTTGTAGAAAAATTAAACAGACAAAGACAGAATGAACCATGGTCACATTCAACAATTTTACGGAAAATAATTTTGTGTCACCAAAGAGAGATTTTGATAACGGGATTCTTTGCTTTGCTCAAGGTACTCGCTATATCTTGCGGCCCTCTAATTCTGAATGCCTTTATATTGGTTTCTGAGGGTAATGGAAGTTTCAAATATGAAGGTTATATATTGGCCATATCACTCTTCTTCATAAAGATCATAGAATCCTTAGCACAAAGACAATGGTATTTCCGCAGTAGAGTTGTTGGGATGAAAGTTAGATCACTACTTACcgcaaaaatttataaaaaaatattaaggcTATCCAATTCTGCTAGATTGGTTCACTCTAGCGGCGAGATAATGAATTATATGACAGTGGATGCTTATAGAGTTGGAGAATTTCCATTTTGGTTTCATAGGACTTGGACAACAATTCTCCAATTGTCTATTGCTTTAATAATTCTTTTCCGCGCAATTGGACTAGCAACACTAGCATCATTACCGGTGCTAGTTCTAACAGTGTTCTGCAATGCTCCACTGGCAAAGTTGCATCACAAGTTCCATAGCAAACTTATGGGGGCACAAGATAAGAGATTGAAGGCTAGTTCTGAGGCTCTTGTGAATATGAAAGTGTTAAAGCTATATGCATGGGAAACTCATTTTAAAAATGCAATCGAAAAGTTAAGAAATGTGGAACTCAAATTGCTATTTGCGGTCCTATTAAGAAAAACTTATGTTGTCTTTCTCTTTTGGACTTCACCGGTTATGGTATCTGCTGCATCTTTCCTAGCATGTTACCTGCTGAAAATTCCTTTGCATGCAAGTAATGTTTTCACTTTCGTAGCAACTTTACGCCTTGTTCAAGAGTTAATTACAGGCATCCCGGATGTTATTGCAGTAATCATTCAAGCACAAGTTGCATTTGCTCGGATTCATAACTTTCTTGAGACACCAGAACTACATAGTTCAAATTTCAATAACAGGGGCTTAGATGACAAACTCAAAGTCTCAGTTGTAATAAAATCAGCCGACTTTTCATGGGAAGGTAATGCATCAAAGCCAACACTAAGAAACATAGATTTGAACGTTAGACACGGCAAAAAGGTGGCTATTTGTGGAGAAGTTGGCTCAGGAAAATCAACCCTCCTGGCAACAATTCTTGGAGAAGTTCCGAATACAAAGGGAACGATTGATGTTtatgggaagtttgcatatgtTTCTCAAACAGCGTGGATACAAACAGGTACAATACgggaaaatattttgtttggatCCAAGTTCAATGATCAAAGATATCAAGAAACACTTCAAAGGTCTTCACTGATAAAGGATCTTGAGTTGCTTCCCTACGGTGACCTCACTGAAATAGGTGAGAGAGGAGTTAATTTAAGTGGAGGTCAAAAACAGCGAATTCAACTTGCTCGGGCACTTTATGAGAATGCTGATTTATATCTCTTGGATGATCCATTTAGTGCTGTTGATGCGCATActgcaaaaaatttgtttaatGAATACATCATGGAAGGACTCAAAGGGAAAACTGTCTTACTCGTGACTCATCAAGTTGACTTTCTCCCAGCATTTGATACTGTTTTGTTAGTGTCAGATGGTGTAATCCTACAAGCTGGTCCGTATCACCACCTAATGACCGAAAGCAAAGAATTCCAAGACCTTGTCAATGCTCACAAGGTTACTGCCGGTTCAAACCAGCTCGTGAATGTTACTTTCTCTCAAGCTTCTAGAACTACTCAAGCTTTAGTGAAAAAGCAGTGTGAAGAAACAAATGGAAATCAATTAATTCAACAAGAAGAAAGAGAGATAGGAGACACAGGGTTCAAGCCTTACTTGCAATATCTGAATAAAACGAAAGGctatattttcttctccgttgCTACATTCTGTCACATTGTTTTTGTGGTTTCTCAGATACTGCAAAACACGTGGATGGCTGCTAATGTCGACAATCCCCATGTCACCACGTTGCAATTGGTTTTAGTTTATTTCTGGATTGGAGCTTCTTCAATATTTTTCATGGTCTCATCTGATATGAGCATTATGGATCTTGACATGCCATTTAGCCTCATTTTTTCCGTTGGATCCACTATAAACTTTTATGCTTGTCTTATAGTATTATCAGTTGTCACTTGGCAAGTGTTGATTGTGGTTATACCAATGATATATGCTACAATTCGTTTACAGAGATACTACTTAGTCTCAGAAAAACAAATGATGCGGATGAGCGGCACAACAAAATCCTATTTAGCTAATCATGTAGCTGAAACTGTTGCCGGAGCTGTGACAATAAGGGCTTTTGAGGAAGAAGATCGTTTTTTTAAGAAGAATCTTGATCTAATTGATATGAATGCTAGTACATTTTTCCACTGTTTTGCCTCAAATGACTGGTTGACGCAACGACTAGAAACAATAAGCGCACTTGTTCTTTCCTCTGCAGCACTTTGCATGGTTATACTTCCACCAGGGACTTTCACCTCTGGATTTATCGGTCTAGCTCTGACTTATGGCCTTTCACTAAATGCTTTCTTAGTATATTCAATTGGAATTCAATGTCGTCTCGCAGATAATATAATATCAGTAGAGAGGCTAAATCAATATATGCATATACAAAGTGAGGCAAAAGAAATAATAGAAGGTAATCGTCCTCCTTTGAATTGGCCAGTTGCAGGCAAAGTCGAAATAAATGACTTGAAGATACGATACAGACCCGATGGACCGCTTGTACTACATGGGATCACATGCACATTTGAAGCAGGTCACAAGATAGGTATTGTTGGAAGAACAGGCTGTGGGAAATCCACTCTTATTGGTGCTTTATTTCGTCTCGTGGAACCAGAAGGAGGAAAAGTTGTAGTTGACGGCTTAGACATCTCGTCGATTGGTCTTCATGATTTGAGGTCGCGTTTTGGGATTATACCTCAGGAGCCTACCCTTTTTAATGGAACAGTGAGATTTAATATGGACCCTTTATCTCAACACACTGATCACGAAATATGGGAGGTTCTCGGGAAATGCCAACTTCGAGAAGTTGtccaaaagaaagaagaaggtTTAAACTCCTCAGTTGTTGACGATGGATCAAACTGGAGCATGGGACAAAGGCAGTTATTCTGTTTAGGGCGCGCTCTTTTAAGGAGAAGTAAGATATTGGTACTGGATGAAGCAACTGCATCAATCGACAACTCAACTGATTTGATTCTACAGAAAACAATTAGAACCGAGTTTGCAGATTGTACAGTGATCACAGTAGCACACAGGATACCAATTGTGATGGATTGCACTATGGTTCTCTCAATCAGTGATGGAAAATTGGTGGAGTATGATGAGCCGATGACCTTGATGAAGAGAGAAGAATCGTTGTTCAGGAAGCTTGTCAAGGAATACTGGTCTCATTTTCAGTCTGAAGAATCACATTGA 4203 0.375 MEDYWNMICGDYGYDFKLKDPSSCIINHLFLIFFDLFMLMMLLMIMFRKFSSRPVCGQVRYSNLQLVSAITNGSVALLHLCLGIWVLEETLKKTHKAFPLNWWLLELFHGLTWLFVACAASLQIKQLSRTWIWLFSILIIFVSGVLCALSVSYAIGSRELSLKATLDIISFLGASLLLLCTYKTCKSDDACRDTFDSQLTPFAKAGFFSKLSFWWLNPLMKKGQEKTLQDEDIPKLRASERAESCYLSFVEKLNRQRQNEPWSHSTILRKIILCHQREILITGFFALLKVLAISCGPLILNAFILVSEGNGSFKYEGYILAISLFFIKIIESLAQRQWYFRSRVVGMKVRSLLTAKIYKKILRLSNSARLVHSSGEIMNYMTVDAYRVGEFPFWFHRTWTTILQLSIALIILFRAIGLATLASLPVLVLTVFCNAPLAKLHHKFHSKLMGAQDKRLKASSEALVNMKVLKLYAWETHFKNAIEKLRNVELKLLFAVLLRKTYVVFLFWTSPVMVSAASFLACYLLKIPLHASNVFTFVATLRLVQELITGIPDVIAVIIQAQVAFARIHNFLETPELHSSNFNNRGLDDKLKVSVVIKSADFSWEGNASKPTLRNIDLNVRHGKKVAICGEVGSGKSTLLATILGEVPNTKGTIDVYGKFAYVSQTAWIQTGTIRENILFGSKFNDQRYQETLQRSSLIKDLELLPYGDLTEIGERGVNLSGGQKQRIQLARALYENADLYLLDDPFSAVDAHTAKNLFNEYIMEGLKGKTVLLVTHQVDFLPAFDTVLLVSDGVILQAGPYHHLMTESKEFQDLVNAHKVTAGSNQLVNVTFSQASRTTQALVKKQCEETNGNQLIQQEEREIGDTGFKPYLQYLNKTKGYIFFSVATFCHIVFVVSQILQNTWMAANVDNPHVTTLQLVLVYFWIGASSIFFMVSSDMSIMDLDMPFSLIFSVGSTINFYACLIVLSVVTWQVLIVVIPMIYATIRLQRYYLVSEKQMMRMSGTTKSYLANHVAETVAGAVTIRAFEEEDRFFKKNLDLIDMNASTFFHCFASNDWLTQRLETISALVLSSAALCMVILPPGTFTSGFIGLALTYGLSLNAFLVYSIGIQCRLADNIISVERLNQYMHIQSEAKEIIEGNRPPLNWPVAGKVEINDLKIRYRPDGPLVLHGITCTFEAGHKIGIVGRTGCGKSTLIGALFRLVEPEGGKVVVDGLDISSIGLHDLRSRFGIIPQEPTLFNGTVRFNMDPLSQHTDHEIWEVLGKCQLREVVQKKEEGLNSSVVDDGSNWSMGQRQLFCLGRALLRRSKILVLDEATASIDNSTDLILQKTIRTEFADCTVITVAHRIPIVMDCTMVLSISDGKLVEYDEPMTLMKREESLFRKLVKEYWSHFQSEESH 1400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02692 1400 Pfam ABC transporter transmembrane region 280 539 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu06g02692 1400 Pfam ABC transporter transmembrane region 932 1077 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu06g02692 1400 CDD ABC_6TM_ABCC_D1 281 568 IPR044746 GO:0140359
Tsu06g02692 1400 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1154 1388 IPR003439 GO:0005524
Tsu06g02692 1400 SUPERFAMILY ABC transporter transmembrane region 884 1134 IPR036640 GO:0005524|GO:0016021
Tsu06g02692 1400 SUPERFAMILY ABC transporter transmembrane region 262 573 IPR036640 GO:0005524|GO:0016021
Tsu06g02692 1400 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 597 818 IPR003439 GO:0005524
Tsu06g02692 1400 ProSitePatterns ABC transporters family signature. 720 734 IPR017871 GO:0005524
Tsu06g02692 1400 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 280 560 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu06g02692 1400 Pfam ABC transporter 1171 1319 IPR003439 GO:0005524
Tsu06g02692 1400 Gene3D ABC transporter type 1, transmembrane domain 268 571 IPR036640 GO:0005524|GO:0016021
Tsu06g02692 1400 Gene3D - 1138 1389 IPR027417 -
Tsu06g02692 1400 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 936 1117 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu06g02692 1400 Gene3D - 572 841 IPR027417 -
Tsu06g02692 1400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 591 818 IPR027417 -
Tsu06g02692 1400 Pfam ABC transporter 613 747 IPR003439 GO:0005524
Tsu06g02692 1400 SMART AAA_5 622 795 IPR003593 -
Tsu06g02692 1400 SMART AAA_5 1180 1372 IPR003593 -
Tsu06g02692 1400 CDD ABC_6TM_ABCC_D2 885 1129 IPR044726 GO:0140359
Tsu06g02692 1400 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 59 935 - -
Tsu06g02692 1400 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 935 1400 - -
Tsu06g02692 1400 CDD ABCC_MRP_domain1 595 794 - -
Tsu06g02692 1400 Gene3D ABC transporter type 1, transmembrane domain 847 1136 IPR036640 GO:0005524|GO:0016021
Tsu06g02692 1400 CDD ABCC_MRP_domain2 1152 1372 - -
Tsu06g02692 1400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1144 1387 IPR027417 -
Tsu06g02692 1400 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 59 935 - -
Tsu06g02692 1400 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 935 1400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02692 Tsu-Chr6 34712741 34718221 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02692 546 841 Calmodulin-binding Proteins AT2G36910 27.937 1.05e-27 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02692 K05666 - gmx:100787314 2055.03