Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02690 ATGTGGTTGTTTTCTATGCTCATATTCTTAGTTTCTGGTATATTATGTGCTTTATCAACGTCTTTTGCAGTTGGCAGTAGCGAACTGTCCTTCCAGGCAGCTTTAAATGTTCTATCTTTTTCAGGAGCATTTTTACTTCTGTTATGCACATACAAACCATATAAATGTAAAGATGCTGACAGAGAAATCAATGAAACCCTATATGCTCGTTTAAATGAAGTTGATCCTATAAGCAATGTAACTCCATTTTTCAAAGCTGGATTCTTTAGTAAGATTTCATTTTGGTGGTTGAATCCATTGATGAAAAGTGGTCAAAAGAAAACACTTCTAGACGAGGATATTCCAAAGTTAAGAGAGTTTGACCGAGCAAAAAGTTGTTATTTATCGTTTGTGGAACagttaaacaaacaaaaacaacatgaaCCATCATCACAATCGTCGGTGGTTTGGCCAATAATTTTGTGCCATCAGAGAGAGATTTTGATAACAGGACTATTTGCTTTGATCAAGGTACTCACTCTATCTTGTGCTCCTCTACTTCTGAATGAATTTATATTGGTTGCTGAAGGTAAAAACAGTTTCAAATATCAAGGTTATGTATTGGCTTTATCACTCTTGTTTATAAAGATCATAGGATCCGTATCACAAAGACAATGGTATTTCCGCACTAGACTTGTTGGAATGAAAGTTAGATCACTACTTACAGCAgccatttataaaaaaatgttaaggcTATCAAATTCTGCTAGATTGATTCACTCTAGTGGTGAGATAATGAATTATATGATTGTGGATGCTTATAGAATTGGAGAATTTCCACTTTGGTTTCATAGGACTTGGACAACAATTCTCCAACTGTGTATTACATTGGTAATTCTTTTCCGCACAATTGGACTAGCAACACTAGCATCATTGGCAGTGATAATTATCACTGTGCTTTACGATGTTCCCCTAACGAAGTTAGAGAACAAGATTCAAAACCATCTTAGGGTGGCACAAGATGAGAGATTAAAGGCTAGTTCTGAGGCTCTCGTGAATATGAAAGTGCTGAAGCTATATGCATGggaaacacattttaaaaatgttatagATAACTTACGAAATGTGGAACTCAAATTGTTATCCATTGTACAAGTAAGAAAGGCATACATTGTCTTTCTCTTTTGGATATCACCGCTGGTGGTATCTGCTGCTTCTTTTCTAGCATGTTACTTCCTGAAAGTTCCTTTGCATGCAAGTAATGTTTTCACCTTTCTGGCAACTTTGCGCCTCGTTCAAGAACCAATTTCAAGCATTCCAGATGTTATTTCAGCGATCATTGAGGCAAGAGTTGCATTTGCTCGGATTGTTAATTTCCTTGAGGCACCAGAACTGCAGAGAGAAAATATCAGGAAAAAGTGCTTCAATCATAACCTCAAAGACTCAATTTCAATCAAATGTGCTGATTTTTCATGGGAAGGTAATGCATCAAATCCAACATTAAGGAACATAAATATGAATGTTAGACATGGGCAAAAGGTGGCTATTTGTGGAGAAGTTGGCTCAGGCAAATCAACTCTCATAGCAACAATTCTCGGAGAAGTTTCTAAAACAAATGGATCGATTGATGTTcatgggaagtttgcatatgtTTCGCAAACAGCATGGATACAAACAGGCACAATACgtgaaaatattttgtttggatCTGAGTTGGATGATCAAAGATATCAAGAAACACTTCAAAAGTCTTCACTGGTAAAGGACCTTGAGTTGCTTCCCTATGGTGACCTCACTGAAATAGGTGAGAGAGGAGTTAATTTAAGTGGAGGTCAAAAGCAGCGAATTCAACTAGCTCGCGCTCTTTATCAGAATGCTGATATATATCTATTAGATGATCCATTTAGCTCTGTCGATGCACATACtgcaaaaaaattgtttaatGAATACATCATGGAAGGACTCAAAGGGAAAGCAGTTATACTTGTGACTCATCAAGTTGAATTCCTCCCAGCCTTTGATTCTATTTTGtTGATGTCTAATGGGGAAATCCTACAAGTTGGTCAATATCACCAGCTATTGACCTCAAGTCAAGAATTCCATGACCTTGTCAATACTCACAAAGAGACTGCTGGTTCTGACCAACTTGCAAGTGCTAATTTTTTGCAGAGGCATTCAACTTCCAGAAAGAGTATGCAAGCTTCCGTGTTGAACAAGTATAAAGCACAAAATGGAAATCGATTAATtcagaaagaagagagagagaaaggcGACACAGGATTCAAGCCTTACTTAAAATATCTAAATCAGATGAAAGGCTACATATTATTCTCTATGGCTTTTCTATCTCACCTTATTTTTGTGGTTTGTCAGATACTGCAAAACTCATGGATGGCTGCTAATGTTGATAATCCCCTTGTCAGCAAATTGCAATTGATTTTAGTTTATTTCCTTATCGGTGGTTTATCAACCGTTTTTTTGCTCAGCAGATGTCTACTAGTAGTTACTTTAGGTCTTCAATCatcaaaacatttattttcaCAGTTGATGAACTCCCTGTTTTGTGCACCGATGTCATTTTATGACTCTACACCATTAGGAAGAGTACTTAGTAGGGTCTCATCTGATCTGACCATTATGGATCTTGACTTGCCCTTTAGCCTCAGTTATTCCGTGGGAGctactattaatttttattctacTCTTACAGTTTTAGCAGTTATCACATGGCAAGTCTTAATTGTGGCTATACCAATTGTATATGTTGCTATTCGCATGCAGAGATACTACTTTGCTTCAGCAAAAGAAGTAATGAGGATGAATGGCACAACAAAGTCCTCATTAGCTAATCATGTCAATGAAACTGTTGCTGGAGCAGCAACAATAAGGGCTTTTGATGAGGAAGATCGTTCTTTTGAGAAGAACCTTGATCTAATTGATATTAATGCGAGTGCTTTTTTCCATAGTTTTGCCTCAAATGAGTGGTTAATCCAACGGTTAGAAACAATCAGTGCAGTTGTTCTTACCGCTGCAGCACTTTTCATAGTTATGTTCCCCCCTGGAACTTTCACCTCAGGAATTATTGCCATGGCTTTATCTTATGGCCTTTCACTAAACAATTCCTTaatatattcaattaaaaatcaatGCACTCTTGCAAATCATATAATATCAGTAGAGAGGCTAAATCAATATATGCATATAGAAAGTGAGGCCGAAGAAATATTAGAAGGAAATCGCCCTCCTCCGAATTGGCCAGTTGTAGGAAAAGTAGAAATAAATGACTTGAAGATACGATACAGACCTGATGGACCACTAGTACTTAATGGGATCACATGCACATTTAAAGAAGGGCACAAGATTGGCATTGTTGGAAGAACAGGCAGTGGGAAATCCACTCTTATTAGCGCTTTATTTCCTCTTGTGGAACCAGCAGGAGGAAAAATTGTAGTTGATGGAATAGACATCTCGTCTATCGGCCTTCATGATTTGAGGTCACGTTTTGGGGTTATACCTCAGGATCCTACCCTCTTTAATGGGactgtaaaatataatttggacCCTTTATCTCAACACATTGATCAAGAGATATGGGAGGTTCTTGGGAAGTGTCAATTGCGAGAAGTTGTCGAAGGGAAAGAAGAGGGTTTAAACTCGTCAGTTTGTGAAGATGGGTCAAATTGGAGCATGGGACAAAGACAGTTATTTTGTTTGGCGCGTGCTCTTTTGAGGAAAAGTAGGATATTGGTGTTAGACGAAGCAACTGCATCAATTGATAATTCTACTGATCTGATTATGCAGAAAACGATTAGAACTGAGTTTGCAGATTGTACAGTGATCACAGTAGCTCATAGGATACCAACTGTGATGGATTGTAGTATGGTTCTTGCTATAAGTGATGGAAAACTGGCGGAGTATGACGAGCCAATGAGCTTGATGAAGAGAGAAGAATCATTGTTCAGGAAACTTGTCAATGAATACTGGTCTCATTTTCAGTCTGCAGAATCGCATTGA 3993 0.3606 MWLFSMLIFLVSGILCALSTSFAVGSSELSFQAALNVLSFSGAFLLLLCTYKPYKCKDADREINETLYARLNEVDPISNVTPFFKAGFFSKISFWWLNPLMKSGQKKTLLDEDIPKLREFDRAKSCYLSFVEQLNKQKQHEPSSQSSVVWPIILCHQREILITGLFALIKVLTLSCAPLLLNEFILVAEGKNSFKYQGYVLALSLLFIKIIGSVSQRQWYFRTRLVGMKVRSLLTAAIYKKMLRLSNSARLIHSSGEIMNYMIVDAYRIGEFPLWFHRTWTTILQLCITLVILFRTIGLATLASLAVIIITVLYDVPLTKLENKIQNHLRVAQDERLKASSEALVNMKVLKLYAWETHFKNVIDNLRNVELKLLSIVQVRKAYIVFLFWISPLVVSAASFLACYFLKVPLHASNVFTFLATLRLVQEPISSIPDVISAIIEARVAFARIVNFLEAPELQRENIRKKCFNHNLKDSISIKCADFSWEGNASNPTLRNINMNVRHGQKVAICGEVGSGKSTLIATILGEVSKTNGSIDVHGKFAYVSQTAWIQTGTIRENILFGSELDDQRYQETLQKSSLVKDLELLPYGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSSVDAHTAKKLFNEYIMEGLKGKAVILVTHQVEFLPAFDSILLMSNGEILQVGQYHQLLTSSQEFHDLVNTHKETAGSDQLASANFLQRHSTSRKSMQASVLNKYKAQNGNRLIQKEEREKGDTGFKPYLKYLNQMKGYILFSMAFLSHLIFVVCQILQNSWMAANVDNPLVSKLQLILVYFLIGGLSTVFLLSRCLLVVTLGLQSSKHLFSQLMNSLFCAPMSFYDSTPLGRVLSRVSSDLTIMDLDLPFSLSYSVGATINFYSTLTVLAVITWQVLIVAIPIVYVAIRMQRYYFASAKEVMRMNGTTKSSLANHVNETVAGAATIRAFDEEDRSFEKNLDLIDINASAFFHSFASNEWLIQRLETISAVVLTAAALFIVMFPPGTFTSGIIAMALSYGLSLNNSLIYSIKNQCTLANHIISVERLNQYMHIESEAEEILEGNRPPPNWPVVGKVEINDLKIRYRPDGPLVLNGITCTFKEGHKIGIVGRTGSGKSTLISALFPLVEPAGGKIVVDGIDISSIGLHDLRSRFGVIPQDPTLFNGTVKYNLDPLSQHIDQEIWEVLGKCQLREVVEGKEEGLNSSVCEDGSNWSMGQRQLFCLARALLRKSRILVLDEATASIDNSTDLIMQKTIRTEFADCTVITVAHRIPTVMDCSMVLAISDGKLAEYDEPMSLMKREESLFRKLVNEYWSHFQSAESH 1330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02690 1330 Pfam ABC transporter 1101 1249 IPR003439 GO:0005524
Tsu06g02690 1330 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 1 1330 - -
Tsu06g02690 1330 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 1330 - -
Tsu06g02690 1330 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 773 1047 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu06g02690 1330 SUPERFAMILY ABC transporter transmembrane region 756 1064 IPR036640 GO:0005524|GO:0016021
Tsu06g02690 1330 Gene3D - 1068 1320 IPR027417 -
Tsu06g02690 1330 CDD ABCC_MRP_domain1 476 676 - -
Tsu06g02690 1330 Gene3D ABC transporter type 1, transmembrane domain 149 450 IPR036640 GO:0005524|GO:0016021
Tsu06g02690 1330 CDD ABC_6TM_ABCC_D2 770 1059 IPR044726 GO:0140359
Tsu06g02690 1330 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 478 699 IPR003439 GO:0005524
Tsu06g02690 1330 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 469 699 IPR027417 -
Tsu06g02690 1330 Coils Coil 318 338 - -
Tsu06g02690 1330 Gene3D - 451 724 IPR027417 -
Tsu06g02690 1330 SUPERFAMILY ABC transporter transmembrane region 149 454 IPR036640 GO:0005524|GO:0016021
Tsu06g02690 1330 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1074 1318 IPR027417 -
Tsu06g02690 1330 CDD ABCC_MRP_domain2 1082 1302 - -
Tsu06g02690 1330 Pfam ABC transporter 494 628 IPR003439 GO:0005524
Tsu06g02690 1330 Gene3D ABC transporter type 1, transmembrane domain 731 1066 IPR036640 GO:0005524|GO:0016021
Tsu06g02690 1330 CDD ABC_6TM_ABCC_D1 162 449 IPR044746 GO:0140359
Tsu06g02690 1330 Pfam ABC transporter transmembrane region 769 1027 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu06g02690 1330 Pfam ABC transporter transmembrane region 161 426 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu06g02690 1330 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1084 1318 IPR003439 GO:0005524
Tsu06g02690 1330 SMART AAA_5 1110 1302 IPR003593 -
Tsu06g02690 1330 SMART AAA_5 503 676 IPR003593 -
Tsu06g02690 1330 ProSitePatterns ABC transporters family signature. 601 615 IPR017871 GO:0005524
Tsu06g02690 1330 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 161 441 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02690 Tsu-Chr6 34690818 34696353 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02690 476 732 Calmodulin-binding Proteins AT2G36910 27.899 6.90e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02690 K05666 - gmx:100787314 2020.74