Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02654 ATGTCTACAAAGGGTAAGAAAGTTGCAATAGGAATCGACTTAGGAACAACATATTCTTGTGTTGCAGTGTGTATGAATGATAAGGTAGAAATCATAGTGAACGATCAAGGGAATAGAATAACACCTTCTTATGTTGCCTTCACTGATTCTCAAAGGATGATTGGTGATTCTGCTTTCAATATGGCTGCTTGCAACCCAACCAACACTGTCTATGATGCGAAGAGGCTAATTGGTAGGAAATTTTCTGACACCATAGTTCAAAGTGATATGAAATTTTGGCCATTTAAAGTAATTGCTGGCCTAGATGACAAACCTATGATTGTTGTCAATTACAACaatgaagaaaaacaattttctgcTGAGGAAATATCATCCATGGTATTAGTAAAAATGTTAGAGATGGCAGAAGCATACCTTGGATCAATAGTGACGGATGTTGTTATAACCGTTCCTGCTTATTTTAATAACTCACAACGTGAAGCTACTAGAGATGCAGGTGTTATTGCAGGCCTCAATGTTATGCGAATAATCAACGAGCCTACTGCAGCAGCAATTGCATACGGCCTTGACATGAAACCACTTAATCATGGGTGTagacatgtttttatttttgatttaggTGGTGGTACTTTGGATGTGTCTATTGTCACATTTGTGAAAGATGACATCAAAGTTAAAGCCCATGCCGGAGACACTCACCTCGGAGGACAGGACTTTGATAATACAATGGTGAACCATTTTGTGAAGGAGTTCTTGAGGAAGCATAAAATTGACATAAGTGGAGACCCAAGAGCCGTGAGGAGGTTGAAGTCTGCTTGTGAGAAAGCAAAGAGAATACTTTCGTCCAATACTGACACTACAATTgaaatagaatgtttaaaacAAGATATAGATTTCTACTCAACAATCAGTCGCGCAAAGTTTGAGGAACTCAACAAGAATCACTTCAACAAGTGCATGGAAATTGTAGAAAAGTGTCTAGTAGATAGCGGCGTTGAGAAGAGTAGCATTGATGATGTTGTCCTAGTCGGAGGCTCTACAAGGATTGTAAAATTGCAACAACTATTGAGTGATATATTTGAAGGCAAGGAATTATGCAAAAGAATCAATGCCGATGAGGCGGTTGCATATGGTGCTGCAGTCCAAGCATCTATATTGAGTGGGGAATTCAATGAAAAGGTTCAAGTTTTGAAGGAAGTGATTCCTTTGTCCCTTGGATTGGAAACACATGGGGGGatcatgaaaataataattcctAGGAATACCACAATTCCTACAAAAAAGGAACACATATTCACCACACATTTTAACAACCAAACCAATATTCTAATTCATGTTTATGAGGGTGAGAGACAAACCACCAGGGACAACAACTTGCTAGGAAAATTTGTGTTGGAAATTCCTCCGGCTCCTGCAGGTATTCCTCTAATCAAGATTAGCTTCCAAATTGATGATGATGGCATATTACACGTCGCTACCTCGGAAAAAATCTCCGGAGTTAACAAGAAGGTTAAAATAATAAGTGATAAAGGACGGCTATCAAAGGAGGAAATTGAGAGAATGATCAAAGAAGCTGAGAAGTACAAAGAGGAAGACAAGAGGTATAGGATGAAGGTGGAAGCAAGAAATGCATTGGAGAAGTATGCATACAACATAAGTAATGCCATAAATGATAAAGAGATTAGCTCAAAGCTTTCTTCAAAAGACAAGAAAGTGATCAATGAAGCAATTGATTCGGTCTTAATGTGGCTAGATGTCAATGTGGTTGCAGAACAACGTGATTTTGAATATTATAGAACTCTTCTTTCAAACGTGTTTGATCCAATTATTGTCAAGATGATAAACGATGAGGAAAATAACGTGGATATTAAAAAGAATCGTTGGTCATCATTATTAGCAAAATATGCTTTCAGGATAGGGTGTTCAGCTGCAATTTATACATATCGTGACAAAGGACTCCTTCCATCAAATTATAGTATTTTCTTCAATCGAAACCAGAACACTCAAGACTCCGTTTCCCTCTTGCGCTGTCAATTCCACGTTCAACCCACTCCTCGTGAAAAAGCTCTCTTGGCAGAAGATTCAGCTCTCAAGCTATTCAAATCCTATAAGCAGAGTGTGAAAAAGCTCTGA 2133 0.3722 MSTKGKKVAIGIDLGTTYSCVAVCMNDKVEIIVNDQGNRITPSYVAFTDSQRMIGDSAFNMAACNPTNTVYDAKRLIGRKFSDTIVQSDMKFWPFKVIAGLDDKPMIVVNYNNEEKQFSAEEISSMVLVKMLEMAEAYLGSIVTDVVITVPAYFNNSQREATRDAGVIAGLNVMRIINEPTAAAIAYGLDMKPLNHGCRHVFIFDLGGGTLDVSIVTFVKDDIKVKAHAGDTHLGGQDFDNTMVNHFVKEFLRKHKIDISGDPRAVRRLKSACEKAKRILSSNTDTTIEIECLKQDIDFYSTISRAKFEELNKNHFNKCMEIVEKCLVDSGVEKSSIDDVVLVGGSTRIVKLQQLLSDIFEGKELCKRINADEAVAYGAAVQASILSGEFNEKVQVLKEVIPLSLGLETHGGIMKIIIPRNTTIPTKKEHIFTTHFNNQTNILIHVYEGERQTTRDNNLLGKFVLEIPPAPAGIPLIKISFQIDDDGILHVATSEKISGVNKKVKIISDKGRLSKEEIERMIKEAEKYKEEDKRYRMKVEARNALEKYAYNISNAINDKEISSKLSSKDKKVINEAIDSVLMWLDVNVVAEQRDFEYYRTLLSNVFDPIIVKMINDEENNVDIKKNRWSSLLAKYAFRIGCSAAIYTYRDKGLLPSNYSIFFNRNQNTQDSVSLLRCQFHVQPTPREKALLAEDSALKLFKSYKQSVKKL 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02654 710 Coils Coil 511 538 - -
Tsu06g02654 710 PRINTS 70kDa heat shock protein signature 36 48 - -
Tsu06g02654 710 PRINTS 70kDa heat shock protein signature 146 166 - -
Tsu06g02654 710 PRINTS 70kDa heat shock protein signature 394 413 - -
Tsu06g02654 710 PRINTS 70kDa heat shock protein signature 209 219 - -
Tsu06g02654 710 PRINTS 70kDa heat shock protein signature 337 353 - -
Tsu06g02654 710 PRINTS 70kDa heat shock protein signature 58 66 - -
Tsu06g02654 710 PRINTS 70kDa heat shock protein signature 8 21 - -
Tsu06g02654 710 PRINTS 70kDa heat shock protein signature 369 389 - -
Tsu06g02654 710 PRINTS 70kDa heat shock protein signature 474 490 - -
Tsu06g02654 710 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 393 542 IPR029047 -
Tsu06g02654 710 Gene3D Actin; Chain A, domain 4 235 318 - -
Tsu06g02654 710 Gene3D - 10 383 - -
Tsu06g02654 710 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 37C-RELATED 3 621 - -
Tsu06g02654 710 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Tsu06g02654 710 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Tsu06g02654 710 Gene3D - 192 366 - -
Tsu06g02654 710 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 540 617 IPR029048 -
Tsu06g02654 710 Gene3D - 543 615 IPR029048 -
Tsu06g02654 710 SUPERFAMILY Actin-like ATPase domain 199 386 IPR043129 -
Tsu06g02654 710 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 396 546 IPR029047 -
Tsu06g02654 710 PANTHER HEAT SHOCK PROTEIN 70KDA 3 621 IPR013126 GO:0005524|GO:0140662
Tsu06g02654 710 Gene3D - 71 126 - -
Tsu06g02654 710 Pfam Hsp70 protein 9 605 IPR013126 GO:0005524|GO:0140662
Tsu06g02654 710 SUPERFAMILY Actin-like ATPase domain 7 191 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02654 Tsu-Chr6 34227175 34281355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02654 1 613 Calmodulin-binding Proteins AT3G12580 65.909 0.0 833
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02654 K03283 - gmx:100783822 856.67