Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02646 ATGGAACAGAAACATGTTCTTTTGTCAGCATTGAGTGTTGGTGTTGGATTAGGTGTTGGACTTGGATTAAGTTCAGGACAAACTGTTCAGAAATGGGTTGGAGGGAATCGCGATTTCGACGAGGTTTCTGGTGAGCAGATTGTTGAAGAACTTAAGAGACTTTTGATTGATGGAAAAGATAGCAAAGTTACATTTGATGATTTTCCTAACTTAAGCGAAAGAACTCGAGTTTTGTTGAAAAGTGCTGCTTATGTTCATTTAAAACATCTTAACTTTTCCAAGCACACCAGAAACCTCTCACCAGCAAGCAGGGCTATTTTGCTCTCTGGTCCTGCAGaaCTTTATCAGCAAATGCTTGCTAAAGCTTTAGCTCATTACTCCGAATCGAAGTTGCTATTGTTAGATATTACTGATTTCTCTCTGAAGTTGCAGAGCAGATTTGGATGTTCAAGAAAAGTACCGTCTTTGAGAAGGTCAATATCCGAGATGACTATGGAGCGAATGTCGGGTTTGTTTTCAATGATGTCTTCCACCGGAGAAACTAAAGGAACACTGCGTCAACAAACCGTTGATAGTTCGAATAATCCTCCAAGTCTTCGGAGGAATGCCTCTGCTATGTCAGATCTAAGTAGCACTTCTTCCCAAAGTGGTTCAATAAATCCAGCTCCTTTAAGACGCACAAGCAGCTTGTATTTTGACGAAAAGCTCTTTGTGCAATCACTTTACAAGGTTTTGGTTTCTATCTCAGGAACCGATTCCATCATTTTATACATAAGGGATGTTGAGAAGCTTGTTCTCAGATCACCAAGGTTATTTAATTTACTACAAAAGATGATAAAGAAAATATCAGGCTCGGTATTGATACTCGGTTCCCAGATATTATTAGATTTAGAAGGTGATTGCAAAGAATTAGACGAAAGGATCGCTAGGTTATTCCCTTATAACATTCAGATCAAAGCTCCTGAAGATGAAACTCATCACGGTAGCTGGAAAGGCCAACTCGAAGAAGACATGAAAAGCATTCAGTTTCAAGATACTCGAAACCTCATTGCTGAAGTTCTTGCAGAAAACGACATTGACTGCGATGACTTGAATTCAATATGCCATTCAGACACTATGATACTTAGTAATCATATTGAAGAAATTGTTGTATCCGCGATTTCTTACGATTTGATGAATACCGAAGAACCTAAAGAACCTAAAGAACCTAAATACCGAAACGGAAAGCTAGTTATCTCGGCAAATAGTTTGTCCAAGGGATTGAGTCTATTCCAAGAAGGCAAGAGTAGCGGAAATCTGAAGACTAATAAgGAAAATGTTGTTGAAGATATTGCTGGTGCGAAGAATGACGTGCGGAACTCTACCAATCGTTTGTGTAGCTATAAATTAATCGTATACTTGCAGGAAGTTCCTGACAACGAGTTCGAAAAGCGAATTAGACCAGAGGTTATCCCTGCAAATGAGATAGGTGTTACATTCGCAGATATCGGTGCATTGGATGAGATaaaagaatcacttcaagagcTAGTAATGCTTCCCCTTAGAAGACCTGACCTTTTCAAAGGCGGACTTCTAAAGCCATGTAGAGGCATACTTCTTTTCGGACCTCCCGGCACCGGAAAAACAATGCTAGCAAAAGCGATTGCGAACGAAGCAGGAGCAAGTTTTATTAACGTATCAATGTCCACCATCACTTCGAAATGGTTCGGAGAAGACGAAAAGAATGTCCGAGCTTTGTTCACATTAGCAGCTAAGGTTGCTCCGACGATTATATTTGTGGATGAAGTTGATAGCATGCTCGGTCAGCGTACTCGAGTTGGAGAACATGAGGCCATGAGgaagattaaaaatgaattcatGACACATTGGGATGGACTATTATCAGGACCTAATGAACAGATTCTCGTACTTGCTGCTACAAACAGACCATTTGATCTCGATGAAGCAATTATAAGACGATTCGAGCGCAGCAGGATCATGGTTGGTCTACCATCTGTTGAGAATAGGGAAATGATCCTTAAAACTCTTCTGTCAAAGGAAAAACACGAAAACTTAGACTTCAAAGAATTAGCAATTATGACAGAAGGATTTAGTGGAAGTGATCTTAAGAATTTGTGCATCACTGCAGCGTATCGACCTGTTAGGGAGTTAATACAGCAGGAGCGAAATAAGGAAATGgaaaagaagaaaaaagaggcCGAAAGTGTCAGCTCAGATGATGCTTCAAGTAATAATGATAACGAAGAACGAGAAATTATCTTGAGGTCTTTAAACATGGAAGACATGAAACAAGCTAAGAATCAGGTGGCTGCGAGTTTTGCATCAGAAGGATCGGTAATGGGCGAGCTAAAACAATGGAATGAATTGTATGGAGAAGGAGGTTCAAGGAAGAAACAACAACTCACATACTTCCTTTAA 2418 0.3908 MEQKHVLLSALSVGVGLGVGLGLSSGQTVQKWVGGNRDFDEVSGEQIVEELKRLLIDGKDSKVTFDDFPNLSERTRVLLKSAAYVHLKHLNFSKHTRNLSPASRAILLSGPAELYQQMLAKALAHYSESKLLLLDITDFSLKLQSRFGCSRKVPSLRRSISEMTMERMSGLFSMMSSTGETKGTLRQQTVDSSNNPPSLRRNASAMSDLSSTSSQSGSINPAPLRRTSSLYFDEKLFVQSLYKVLVSISGTDSIILYIRDVEKLVLRSPRLFNLLQKMIKKISGSVLILGSQILLDLEGDCKELDERIARLFPYNIQIKAPEDETHHGSWKGQLEEDMKSIQFQDTRNLIAEVLAENDIDCDDLNSICHSDTMILSNHIEEIVVSAISYDLMNTEEPKEPKEPKYRNGKLVISANSLSKGLSLFQEGKSSGNLKTNKENVVEDIAGAKNDVRNSTNRLCSYKLIVYLQEVPDNEFEKRIRPEVIPANEIGVTFADIGALDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLSGPNEQILVLAATNRPFDLDEAIIRRFERSRIMVGLPSVENREMILKTLLSKEKHENLDFKELAIMTEGFSGSDLKNLCITAAYRPVRELIQQERNKEMEKKKKEAESVSSDDASSNNDNEEREIILRSLNMEDMKQAKNQVAASFASEGSVMGELKQWNELYGEGGSRKKQQLTYFL 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02646 805 ProSitePatterns AAA-protein family signature. 634 653 IPR003960 GO:0005524|GO:0016887
Tsu06g02646 805 SMART AAA_5 527 665 IPR003593 -
Tsu06g02646 805 Gene3D - 490 663 IPR027417 -
Tsu06g02646 805 Gene3D - 664 741 - -
Tsu06g02646 805 MobiDBLite consensus disorder prediction 180 221 - -
Tsu06g02646 805 MobiDBLite consensus disorder prediction 723 748 - -
Tsu06g02646 805 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 369 IPR027417 -
Tsu06g02646 805 Pfam ATPase family associated with various cellular activities (AAA) 531 657 IPR003959 GO:0005524|GO:0016887
Tsu06g02646 805 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 490 719 IPR027417 -
Tsu06g02646 805 Coils Coil 714 734 - -
Tsu06g02646 805 CDD AAA 529 663 - -
Tsu06g02646 805 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 805 - -
Tsu06g02646 805 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 805 - -
Tsu06g02646 805 Pfam AAA+ lid domain 684 727 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02646 Tsu-Chr6 34100249 34106510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02646 442 721 Calmodulin-binding Proteins AT3G56690 35.473 1.51e-39 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02646 - - gmx:100817952 1212.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02646 06 34100249 34106510 Tsu01g04356 01 51481646 51488617 PCT