Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02613 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACGATAACCCTCGAGGTTGAATCTTCTGATACCATCGACAACGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCACCGGATCAACAACGACTCATCTTCGCCGGAAAACAGCTTGAAGACGGCCGCACTCTTGCCGACTACAATATCCAGAAGGAATCAACTCTTCACCTTGTTCTCGGTCTCCGTGGTGGTGCTAAGAAGCGTAAGAAGAAGACTTACACTAAGCCAAAGAAGATTAAGCATAAGCATAGGAAAGTTAAGCTTGCTGTTCTTCAGTTTTAG 318 0.456 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLGLRGGAKKRKKKTYTKPKKIKHKHRKVKLAVLQF 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02613 105 SUPERFAMILY Ubiquitin-like 1 93 IPR029071 -
Tsu06g02613 105 Pfam Ubiquitin family 3 73 IPR000626 GO:0005515
Tsu06g02613 105 Gene3D - 1 79 - -
Tsu06g02613 105 CDD Ubl_ubiquitin 1 76 - -
Tsu06g02613 105 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Tsu06g02613 105 PRINTS Ubiquitin signature 11 31 IPR019956 -
Tsu06g02613 105 PRINTS Ubiquitin signature 53 74 IPR019956 -
Tsu06g02613 105 PRINTS Ubiquitin signature 32 52 IPR019956 -
Tsu06g02613 105 PANTHER UBIQUITIN-40S RIBOSOMAL PROTEIN S27A-1 1 105 - -
Tsu06g02613 105 SMART ubq_7 1 72 IPR000626 GO:0005515
Tsu06g02613 105 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Tsu06g02613 105 PANTHER UBIQUITIN 1 105 - -
Tsu06g02613 105 Gene3D - 80 105 IPR038582 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02613 Tsu-Chr6 33632132 33632449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02613 1 105 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 98.095 3.27e-70 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02613 K02977 - psom:113282444 174.096