Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02579 ATGATGAGCAACGAGAGCAACCTCCAGGTGACTTTCTCAAAGCGTCGTAGCGGGCTCTTTAAGAAAGCTAGCGAGCTTTGCAACCTTTGTGGTGTAAATGTTGCTCTCATTGTATTCTCACCAAGTGGAAAGACATTTTCCTTTGGTCATCCCAATAGTGATACGGTCATAGATCGATATCTCTCTAAGGTCCCACCCCAAAACAACAGCACCTTGCAATTCATTGAGGCTCGTCGTAGCGCCATCATATGCGAGCTCAATGTTCAGCTGACTCAAATTAACAACATGTTGCACGACCAGAAGAAGCGTGAAGATGAGTTGAGCCATTTGCGCAAGGCAACCGAGGCTCAATTTTGGTGGGCTTGTCCAATTAATAAGATGGATAAGTTTCAACTTGAATTGCTAAAACAGGCTTTGGAGGACCTTAAGAAACTCACTGCACAACATAATGATAGGATTGCAATTCAGGGTGCTCTTACACAAACTCTTCCATTTTATGTTGGCAATGCTTCATCCTCTAATAtctctcatcatcatcaaccaaatTATCAACAATCTCAAATGCCTGCACCACAATATTTTCATAACCCTATGTTGGAACATCATTTGTTTGGCTTCAACAATATGGGCGGAGGAGGATATGGACATCCTAGATTCTTTTGA 663 0.4103 MMSNESNLQVTFSKRRSGLFKKASELCNLCGVNVALIVFSPSGKTFSFGHPNSDTVIDRYLSKVPPQNNSTLQFIEARRSAIICELNVQLTQINNMLHDQKKREDELSHLRKATEAQFWWACPINKMDKFQLELLKQALEDLKKLTAQHNDRIAIQGALTQTLPFYVGNASSSNISHHHQPNYQQSQMPAPQYFHNPMLEHHLFGFNNMGGGGYGHPRFF 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02579 220 PRINTS MADS domain signature 29 50 IPR002100 GO:0003677|GO:0046983
Tsu06g02579 220 PRINTS MADS domain signature 14 29 IPR002100 GO:0003677|GO:0046983
Tsu06g02579 220 SMART madsneu2 1 51 IPR002100 GO:0003677|GO:0046983
Tsu06g02579 220 SUPERFAMILY SRF-like 2 67 IPR036879 GO:0003677|GO:0046983
Tsu06g02579 220 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Tsu06g02579 220 PANTHER MADS BOX PROTEIN 3 167 - -
Tsu06g02579 220 Gene3D - 72 162 - -
Tsu06g02579 220 Coils Coil 132 152 - -
Tsu06g02579 220 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 3 167 - -
Tsu06g02579 220 Gene3D - 4 71 IPR036879 GO:0003677|GO:0046983
Tsu06g02579 220 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 3 48 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02579 Tsu-Chr6 33267083 33267745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02579 2 173 Type I MADS-box Gene Family AT5G60440 49.432 9.00e-51 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu06g02579 SRF-TF 8.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02579 - - mtr:MTR_1g105905 281.952