Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02577 ATGCTACTCTCAGACAAAGAATTTTCGACATCGTGTTGTTCAAGCAATGGATCCGTTGGAATCACTGACGAAAGGATCAGATCGGTAGATCTAGAGGATGAAGTTTTGATTGCTGGACGTAAAGGTCATGCCGTGGGTGATATTCCTGGTGTCAGATTCAAGGTTGCGAAGGTTTCTGGTGTCTCTCTCCTTGCTCTTTTCAAGGAGAAGACGGAGAAGCCCAGGTCTTAA 231 0.4545 MLLSDKEFSTSCCSSNGSVGITDERIRSVDLEDEVLIAGRKGHAVGDIPGVRFKVAKVSGVSLLALFKEKTEKPRS 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02577 76 SUPERFAMILY Nucleic acid-binding proteins 30 74 IPR012340 -
Tsu06g02577 76 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 27 76 IPR006032 GO:0003735|GO:0005840|GO:0006412
Tsu06g02577 76 Gene3D - 21 76 IPR012340 -
Tsu06g02577 76 PANTHER BNACNNG03140D PROTEIN 27 76 - -
Tsu06g02577 76 Pfam Ribosomal protein S12/S23 23 75 IPR006032 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02577 Tsu-Chr6 33242483 33244405 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02577 22 76 Cytoplasmic Ribosomal Protein Gene Family AT3G09680 75.439 4.48e-22 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02577 K02973 - han:110868369 80.4925