Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02558 ATGGAGAGACAACAAGAACCATCTCAACCTACAAATCAAGgtaatgaaaagaaaaaacattataGAGGTGTGAGGCAGAGACCATGGGGGAAATGGGCAGCTGAAATAAGAGATCCTAAAAAGGGAGCAAGAGTTTGGCTTGGCACCTTTGACACAGCTGAAGGTGCAGCAAGAGCTTATGATGAAGCTGCCTTAAAGTTCAAAGGAAACAAAGCTAAAACAAATTTCCCTCCGCCCGTTTCTCATTCGCCTTCAAATCCATCGCCACCGCGTAATAACAACAatgcttcatcttcttctttgcaGTTTCCTCCACCAAAACCTCATGTTCCGTTGATGACAACGGAAGAAGAAGTATTCCCAAACTTAATGCAATATGCTCAAGTACTTTGTAGTAAGGATGATGAAGATCTTCGACGTGCCGCTTCAAGCctttacaataataattatcACCAtcacaacaataacaataatgaGCAATTTCGTTATTATAATTTGCCGCCATTTTTCTCAACACCATCAACAATGTCGCCGTCGTCTACTTCTACCGATGTTATTGTGCCTAGAGTTGGAGATCGGCGTGGTTTTGATAAAAGGAACACGAGGGGTTTATAG 615 0.3805 MERQQEPSQPTNQGNEKKKHYRGVRQRPWGKWAAEIRDPKKGARVWLGTFDTAEGAARAYDEAALKFKGNKAKTNFPPPVSHSPSNPSPPRNNNNASSSSLQFPPPKPHVPLMTTEEEVFPNLMQYAQVLCSKDDEDLRRAASSLYNNNYHHHNNNNNEQFRYYNLPPFFSTPSTMSPSSTSTDVIVPRVGDRRGFDKRNTRGL 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02558 204 PANTHER DNA-BINDING DOMAIN 4 185 IPR044808 GO:0003700|GO:0009873
Tsu06g02558 204 MobiDBLite consensus disorder prediction 1 36 - -
Tsu06g02558 204 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Tsu06g02558 204 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Tsu06g02558 204 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 4 185 - -
Tsu06g02558 204 MobiDBLite consensus disorder prediction 87 103 - -
Tsu06g02558 204 CDD AP2 19 76 IPR001471 GO:0003700|GO:0006355
Tsu06g02558 204 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Tsu06g02558 204 MobiDBLite consensus disorder prediction 70 109 - -
Tsu06g02558 204 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
Tsu06g02558 204 Gene3D AP2/ERF domain 19 78 IPR036955 GO:0003700|GO:0006355
Tsu06g02558 204 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Tsu06g02558 204 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02558 Tsu-Chr6 32999910 33001223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02558 12 146 AP2-EREBP Transcription Factor Family AT5G13330 47.222 1.73e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tsu06g02558 AP2 6.8e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02558 - - mtr:MTR_6g033255 255.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02558 06 32999910 33001223 Tsu06g02558 06 32999910 33001223 ECH