Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02548 ATGGAAGAGATAGAGAAAGAGTCAGTTTCTTCACCTACCAAGGTTAAAGAAATCGACGGCCTCCTGGCGGACGTCGGTTACAAAGTCAAGTCATCTGAGCTACATCAGGTAGCTCAGAACATCGAACGGTTGGAGAATGTAATTGTGAATTCATCGTCAAGCGACATTTCTCAATTCGCTTCCGATACCGTTCACTACGATCCCTCCGACATTGGCAATTGGGTGGACAATCTCCTCTCGGAGTTTGACCACACCAATTCTCTACCCTATGATTTCTCTCAACTGCCAGATCTCACACAAGatcaacaccaccaccaccaccaattAAAGGTGGTTAACACCGTGGAAGAAGACTCAGCTATAAAGCTTGTTCACATGCTGATGACATGTGCTGATTGCTTGCAACGTGGCAACATACAATTGGCAGGCTCGTTAATCGAAGGCATGCAAAGTTTGTTAGCAAACATGAACACAAACTCCGGCATCGGAAAAGTCGCCGGATACTTCATCGACGCTTTAAACCGTCGCATCTTCGGTCAAAACAATATCATCCATATCGAGAACGATGTTCTTTACCATCACTACTACGAAGCTTGTCCATATCTCAAATTCGCTCATTTCACAGCAAATCAAGCTATACTTGAAGCTTTCAACGGTCACGATTGTGTCCACGTCATTGATTTCAATCTCATGCACGGTCTTCAATGGCCGGCGCTAATTCAAGCTCTAGCACTTCGTCCTGGTGGACCTCCGTTTCTCCGCCTTACCGGCATTGGTCCGCCGTCGCATGATGACCGTGACAACCTCCGTGAAATTGGACTCCGTCTTGCCGAACTAGCTCGCTCCGTCAACGTTAGGTTCGCTTTCCGTGGAGTCGCGGCGTGGCGGCTCGAAGATGTGAAGCCATGGATGCTTCAGGTGAGTTCTAAAGAAGCCGTTGCGGTTAATTCTATTATGCAACTTCATCGTCTTCTTGGATCTGAACCCGACCCGAATAATCCTCCCGCTATTGAAACGGTTTTGGGTTGGATCCGTAGTTTGAATCCGAAAATCATGACGGTTGTGGAACAAGAAGCGAATCATAACGAAGATGGGTTTATGGAACGGTTCACTGAGGCATTACATTATTACTCGACTGTTTTTGACTCGTTGGAAGCGTGTCCGGTTGAACCGGATAAAGCAATGGCTGAGATTTATTTGCAGAGGGAGATTTGTAACGTGGTGTGTTGTGAAGGACCGGCTCGAGTTGAGAGACATGAACCGCTTGTTAAGTGGAGAGAACGGCTTGAGAAAACCGGGTTCAAACCGTTACATTTGGGTTCGAATGCTTTTAAACAAGCTAGTATGTTGTTGACTCTGTTTTCAGCGGAGGGTTATTGCGTTGAAGAGAATCAAGGGAGCTTGACTTTGGGTTGGCATAGCCGTCCTCTCATTGCGGCTTCGGCTTGGCAAGCTGTGCCTGAAATGCTGCGTTTTGATAGTTGA 1485 0.4613 MEEIEKESVSSPTKVKEIDGLLADVGYKVKSSELHQVAQNIERLENVIVNSSSSDISQFASDTVHYDPSDIGNWVDNLLSEFDHTNSLPYDFSQLPDLTQDQHHHHHQLKVVNTVEEDSAIKLVHMLMTCADCLQRGNIQLAGSLIEGMQSLLANMNTNSGIGKVAGYFIDALNRRIFGQNNIIHIENDVLYHHYYEACPYLKFAHFTANQAILEAFNGHDCVHVIDFNLMHGLQWPALIQALALRPGGPPFLRLTGIGPPSHDDRDNLREIGLRLAELARSVNVRFAFRGVAAWRLEDVKPWMLQVSSKEAVAVNSIMQLHRLLGSEPDPNNPPAIETVLGWIRSLNPKIMTVVEQEANHNEDGFMERFTEALHYYSTVFDSLEACPVEPDKAMAEIYLQREICNVVCCEGPARVERHEPLVKWRERLEKTGFKPLHLGSNAFKQASMLLTLFSAEGYCVEENQGSLTLGWHSRPLIAASAWQAVPEMLRFDS 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02548 494 Pfam Transcriptional regulator DELLA protein N terminal 19 86 IPR021914 -
Tsu06g02548 494 Coils Coil 27 47 - -
Tsu06g02548 494 ProSiteProfiles GRAS family profile. 114 484 IPR005202 -
Tsu06g02548 494 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 7 486 IPR005202 -
Tsu06g02548 494 Gene3D - 17 82 IPR038088 -
Tsu06g02548 494 PANTHER OS05G0574900 PROTEIN 7 486 - -
Tsu06g02548 494 Pfam GRAS domain family 123 484 IPR005202 -
Tsu06g02548 494 SMART DELLA_2 19 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02548 Tsu-Chr6 32863313 32864974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02548 18 484 GRAS Transcription Factor Family AT1G14920 48.337 5.07e-163 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tsu06g02548 GRAS 1.5e-124 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02548 K14494 - gmx:100814551 731.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02548 06 32863313 32864974 Tsu06g02548 06 32863313 32864974 ECH