Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02511 atgcaGATCCGGAGACATAGTTCCGAATATCATAAATTCTACGGTTCTTCCGATTCGTCTCACTTTCCAGAACACAAGTCCACAGAGGACTCCAAACCTGATATAAAAAGGCACCCCCGGGTAAATGATGCAGAAAATGAGTGTCCAATGTCACGTCGGATTGTGATTGATATGGGGAAAGAGAGTCAGAGTCTCAAGGATTCCGCTGTTGCAGACAGTAACATGGTCGTTGGCAAAGAAATTGATTGCACAAGTGCAAATGCTTGTCCTCTTCGCAAAGAGATTGACTGTTCAAGTGAAAATGCTTGTCCTGTTGGCCCTAGTCCGATGGAAATCAATGATGAATGTCAGACCTCAAATATTACCAATGAAGACAAATTTCATATTGATGTTGAAACAGCACAGCTGTGTCAGAACCCCGATGCTACCTCTATATCAGTGACCGATACTGATGTaacaaatgaagaagaaataTATGTGGCACCAAATATTGGCGTGGAGTTTAAATCAGAAGAGCATGCTTACAAGTGTTATAACAATTATGCTGTTCTGAAAGGTTTCAGCATAAGAAAGGATTTCATCAACAAAAGTAGGGTAGATGGTTCAGTGGTATCCAGAAGATTCACCTGCCATAGACAGGGTTTTCGGTCTAATAAAGATTATAAAAATCCGAAGAATATCCAGCAGGAAACAAGGACTGGTTGCTTGGCACACATGACTATTTCTCGTCAGCCAAATAGCAAGTTTCGTGTCACTAGTTTTGAAACAGAACACAATCATGAGTTTGTAACACCCTCTGATGCTCATATGTTGCCATCACAGAAGAAATTGAGTTTTGCTCAAGCTGTCGAAGTGAACATAAATGAGTCCACTTTGGATGGGGTACCGAAACTGGGAATGGGATTTGATTCAGAGGAGCATgcatatgaattttataatacATATGCTGCACAAGTAGGCTTCAGTGTGAGAAAAGATTATGTAAATAGGAGTAAAGTTGATGGCGCTGTAGCATCAAGAAGGTATACTTGCTACAGAGAAGGTTTTCGGCAGAAAGAGAAACGAGATAAGAATGTAAAGAGACCTCGGAAGGATACTAGAATTGGATGTTTAGCACAACTGATTATTTCTCGTCAGCCTGATGGCAGGTATCATGTAactcattttgaagaaaaacacAATCATGAGCTTGTTGCTGCATGTAGAGTTCATATGTTAAGATCACAGAAGAGATTAGCTGCAACTCGAGTTGAAGACAATATCGTAGCTGGATGCAGTGCGCTGCCGAAGCCAGCCTCTACATCCAACTGCAGGACAGTTGAAGGTTTTCATGATTTAGATTATGATCCTGTGGATAGTGAATATCAACTACCTTTCAAATCTACAAGAGAAATAAAAGCGGACGAAATTGAAAAGATTAGGCATTACTTTCAAAGCAAGCAAGCAAAGAATCCTTCTTTCTTTTATGCTTTCCAGCTTGATGCCGAGAAtcaaataactaatatattttgGGCTGATGAAAAGATGATAGTTGACTACAATGATTTTGGtgacgttgtttgttttgatacgagttataaattttataaggaCTCACGCCCGTTTGCTCCATTTCTCGGTATAAATAATCACAGGCAAATGAATATCTTTGGGGCAGCACTTCTATACGATGAATCTGTGGAATCTTTTAAGTGGCTGTTTCATGTTTTCATCGAGGCTATGTCTGGAACCAAGCCAAAGACAATCGTAAGAGACCATGATGCAATAATAGCTGAAGCTATTAATTCCATATTACCTCAAACAAAACAACGAGTTTGTGTTTGGCATGTCTACCAAGATGCCCTCAAGCAACTAAGTCATATGTCTGTTGAATCCGATTCTTTTGTAAATGATTTGAGCTGCTGCTTTTTTAATCATGAGGAAGAAGAGGATTTTGTTAATGCATGGAATGCTCTCATGAACATGTATAATCTGTGGGAAAACGAATGGCTGCGTCAAATATATGAAAGCAGAGACCAATGGGCCATAGCTTACAGAAGACACATTTTTTGCGCCGATATCGCAAGCTTGCTCATGCGAGACAATCTTATTGGGAACTTGAAAAAGCACCTAAAGAATGATTCAAGTGTTATTCCATTTCTCAAGCATCTTGGTAAGATGGTGACCGATTGGCACTACAAGGAATTAGAAGCTAATTATGACACAAGCCGACATATGCCAGCCCTAATGGGCGATATCGTTACATTAAAGCATGCAAGAGATCCATACACACCAAAGATATTTGAGTTATTCCAGAAAGAATATGAAGCATGCTTAAATCTAGTGCTAAAGCCTTGCAGTGAGAGTGGTTCATTGTATAATTATAAAGTTAGCATATATGAACAAGTCCGTGAGTATATGGTTACTTTCGATTCGTCTAATGAGACTGTTAGTTGCAGCTGTATGAAGTTTGAGTGCGTGGGAGTCTTGTGTTGTCATGCATTAAAAGTTCTTGATTATAGGAACATAAGGATAGTTCCATCCAAGTACATCTTAAAGAGATGGACAAAAAATGCTAGAGTTTGA 2565 0.3793 MQIRRHSSEYHKFYGSSDSSHFPEHKSTEDSKPDIKRHPRVNDAENECPMSRRIVIDMGKESQSLKDSAVADSNMVVGKEIDCTSANACPLRKEIDCSSENACPVGPSPMEINDECQTSNITNEDKFHIDVETAQLCQNPDATSISVTDTDVTNEEEIYVAPNIGVEFKSEEHAYKCYNNYAVLKGFSIRKDFINKSRVDGSVVSRRFTCHRQGFRSNKDYKNPKNIQQETRTGCLAHMTISRQPNSKFRVTSFETEHNHEFVTPSDAHMLPSQKKLSFAQAVEVNINESTLDGVPKLGMGFDSEEHAYEFYNTYAAQVGFSVRKDYVNRSKVDGAVASRRYTCYREGFRQKEKRDKNVKRPRKDTRIGCLAQLIISRQPDGRYHVTHFEEKHNHELVAACRVHMLRSQKRLAATRVEDNIVAGCSALPKPASTSNCRTVEGFHDLDYDPVDSEYQLPFKSTREIKADEIEKIRHYFQSKQAKNPSFFYAFQLDAENQITNIFWADEKMIVDYNDFGDVVCFDTSYKFYKDSRPFAPFLGINNHRQMNIFGAALLYDESVESFKWLFHVFIEAMSGTKPKTIVRDHDAIIAEAINSILPQTKQRVCVWHVYQDALKQLSHMSVESDSFVNDLSCCFFNHEEEEDFVNAWNALMNMYNLWENEWLRQIYESRDQWAIAYRRHIFCADIASLLMRDNLIGNLKKHLKNDSSVIPFLKHLGKMVTDWHYKELEANYDTSRHMPALMGDIVTLKHARDPYTPKIFELFQKEYEACLNLVLKPCSESGSLYNYKVSIYEQVREYMVTFDSSNETVSCSCMKFECVGVLCCHALKVLDYRNIRIVPSKYILKRWTKNARV 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02511 854 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 287 854 IPR031052 GO:0006355
Tsu06g02511 854 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 117 278 IPR031052 GO:0006355
Tsu06g02511 854 MobiDBLite consensus disorder prediction 1 46 - -
Tsu06g02511 854 ProSiteProfiles Zinc finger SWIM-type profile. 799 835 IPR007527 GO:0008270
Tsu06g02511 854 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-LIKE 117 278 - -
Tsu06g02511 854 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-LIKE 287 854 - -
Tsu06g02511 854 SMART 26again6 810 837 IPR006564 GO:0008270
Tsu06g02511 854 Pfam MULE transposase domain 519 612 IPR018289 -
Tsu06g02511 854 Pfam FAR1 DNA-binding domain 310 398 IPR004330 -
Tsu06g02511 854 Pfam FAR1 DNA-binding domain 178 263 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02511 Tsu-Chr6 32198289 32203899 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu06g02511 MULE 7e-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02511 K17604 - gmx:102659753 1254.58