Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02494 ATGACTTCCCTTTCATGGTTCCTCATTCTTTTTGCTATTTCTCTTCttatctcaaattttgtttcatCCTCTGCAGTTCAAGATCCTAAACAAGTTGTACAAGATGTACAAAGGAGCATCAAGAATGCTACTAGGAGAAACTTGGGCTATTTATCATGTGGAACAGGCAACCCAATTGATGATTGTTGGAGATGTGAACCAAATTGGGAAAACAATAGGCAAAGATTAGCTGATTGTGCAATTGGATTTGGCAAAGATGCAATTGgtggtaaaaatggtaaaatcTATATTGTAACTGATTCAGGTGATGATGATCCAGTTAATCCTATGCCAGGAACATTAAGATATGGTGCAATTCAAGATGAACCATTATGGataattttcaaaagagatatgGTAATTACATTAAAACAAGAGTTATTggtaaattcatataaaacaatTGATGGAAGAGGTGCTAGTGTTCACATAGCAAATGGGGGGTGTATAACAATACATTATGTTAATAACATTATAATACATGGTATTAATGTTCATGATTGTGTTCCAACTGGGAATACTAATATTAGAAATTCACCTGAACATAGTGGATTTTGGACTGTTTCAGATGGTGATGGAATTTCAGTATTTAATTCACAACATATTTGGATTGATCATTGTTCTTTGTCTAATTGTCGTGATGGACTTATTGATGTTATTCATGGATCAACAGCTATTACTATTTCAAATAACTATATGACTCATCATGATAAGGTCATGCTTTTGGGACATAGTGATTCTTATACACAAGATAAGGATATGCAAGTTACTATTGCTTTTAATCATTTTGGTGAAGGGCTTGTCCAAAGAATGCCAAGgtgTAGACATGGATATTTTCATGTGGTGAACAATGATTACACACATTGGGAAATGTATGCAATTGGAGGGAGTGCTAACCCTACAATCAACAGCCAAGGGAACAGATTCCTTGCACCAGACAACAGATTTAGCAAGGAAGTAACAAAGCATGAGGATGGATCAGAGAGTGAATATAATACTTGGAATTGGAGATCAGAAGGTGACTTGTTCTTGAATGGAGCATTCTTTAGACAAACTGGTGCTGAAGCTTCTTCTATCTATGCTAGAGCTTCAAGTCTTAGTGCAAGACCAGCTTCTCTTGTTGGTTCAATTACTACTACTTCTGGTGTACTTAGTTGCAAGAAGGGAAACCTTTGCTGA 1218 0.3391 MTSLSWFLILFAISLLISNFVSSSAVQDPKQVVQDVQRSIKNATRRNLGYLSCGTGNPIDDCWRCEPNWENNRQRLADCAIGFGKDAIGGKNGKIYIVTDSGDDDPVNPMPGTLRYGAIQDEPLWIIFKRDMVITLKQELLVNSYKTIDGRGASVHIANGGCITIHYVNNIIIHGINVHDCVPTGNTNIRNSPEHSGFWTVSDGDGISVFNSQHIWIDHCSLSNCRDGLIDVIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDNRFSKEVTKHEDGSESEYNTWNWRSEGDLFLNGAFFRQTGAEASSIYARASSLSARPASLVGSITTTSGVLSCKKGNLC 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02494 405 PRINTS Pollen allergen Amb family signature 203 224 IPR018082 -
Tsu06g02494 405 PRINTS Pollen allergen Amb family signature 376 399 IPR018082 -
Tsu06g02494 405 PRINTS Pollen allergen Amb family signature 347 371 IPR018082 -
Tsu06g02494 405 PRINTS Pollen allergen Amb family signature 139 155 IPR018082 -
Tsu06g02494 405 PRINTS Pollen allergen Amb family signature 79 96 IPR018082 -
Tsu06g02494 405 PRINTS Pollen allergen Amb family signature 103 128 IPR018082 -
Tsu06g02494 405 PRINTS Pollen allergen Amb family signature 305 324 IPR018082 -
Tsu06g02494 405 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Tsu06g02494 405 PANTHER PECTATE LYASE 18-RELATED 5 402 IPR045032 GO:0030570
Tsu06g02494 405 Gene3D - 56 398 IPR012334 -
Tsu06g02494 405 Pfam Pectate lyase 138 322 IPR002022 -
Tsu06g02494 405 SUPERFAMILY Pectin lyase-like 57 396 IPR011050 -
Tsu06g02494 405 PANTHER PECTATE LYASE 5 402 - -
Tsu06g02494 405 SMART amb_all 131 328 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02494 Tsu-Chr6 31942639 31945685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02494 7 405 Polysaccharide Lyase AT5G63180 71.642 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02494 K01728 - gmx:100810380 718.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02494 06 31942639 31945685 Tsu06g02494 06 31942639 31945685 ECH