Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02471 ATGACTACGATAGGAATGCTCATGGCTCTTGCTGCCATCAACAATTGGCCATTGTTTCAATTGGATGTCAACACAACATTCTTACATGGAGATCTTAATGAGGAAGTTTATATGAAACCCCCACCAAGTCTCTCTCTTCCACACCTTGACATGTCCAAAGTAGATTATTCCCTCTTCACCAAGCATTCATCAATAGGGTTCACAATTATTTTGGTGTATGTAGATGATCTAGTTCTGGGAGGCACTGATATGGCAGAGATACAGAACATCAAACTCTTACTAGACACCAAATTTAGCATAAAGGATTTGGGTAGTCTCAAGTACTTCTTAGGATTTGAAGTGACTAGAAGCAAAACTAGCATTTCTTTATGTCAAAGAAAGTACACTTTGGATATATTTGAAGATACATGTCTACTTGGAGCAAAACCTTGTTTTAGTCTCATGCAACCACATCTACAACTTAGTAAAGATTCTGGCACTATCTTATCAGATCCCACTGCATATAGAAGATTAGTTGGAAGATTACTTTATCTCACTCACTCTAGACCAGAGATTGCTTATGCAGTAAACAAACCCAGTCAATTTTTATCTGCTCCAACTACTGATATGTTAGCAGGCCTTCATGTCCTCAAATATCTCAAGAATAATCTTGGCAAAGGACTTTTATTTAGTTCTATTCTACTGTTAGCCTCGAGGGTTTTTCTGATTCTGATTGGGGTGTTTGTCCAGATACAGGGAGGTCAACAACTGGTTATTGCTTCTTTATTGGTAATTCCCTTGTCAGTTGGAAAATCAGCACTCCATATAGCAGTTAATCCAGTATTCCATGAGCGCACAAAGCACATAGAAATTGACTGCCATGTTATTCGAGACAAGGTTCAAGCTGGGATTCTCCATATACTACAGTTAGCTCCAAATATCAAGTTGCAGATATTCTCACCAAATCCCTTCATCCAGGCTCATTCAATagtcttcaaagcaagcttggACTGTTGGATATCCAATTCAGCTTTAGGGAGGGTGTTGAAACTAGTGATGAGTCACAGCTTGAGGGAGGGTGTTGAAACTAGTGATGAGTCACTTACTTGTGATACAAGTAAAAcaATAGAAATGAAGAATTCTGGAAAAGAGATTGGATTGAATGTTGACATTAATAACAAGCTTTCTCTTCAATCTAATGCCTCCAAAGGTCCACCATCCCCCAAGCAACCTTTCCTCATtggtGTTGCTGGGGGAACTGCATCTGGAAAAACAACTGTGTGCAACCTAATAAATACTCAGCTTCATGATCAACGTATTGTTCTCATTAATCAAGACTCATTTTACCACTCATTGAGTGACAAGATCTTACAGAAAGTTAATGACTACAACTTTGATCATCCTGATGCATTTGATACGGAACTTATGCTTTCTAGTTTGGAGAAATTAAAACAAGGACAAGCTGTTAACATACCAAATTATGATATCAATAGTGGCATGAGAGTTGAACCTCCACGTCAGGTTCATAGTGCAGATATCATAGTTTTAGAAGGGATACTTGTTCTTCATGATCCTCGTGTTCGTGATCTGTTGAACATGAAGATCTTTGTTGATGAAGATTCTGATATACGCCTTGCACGAAGGATTCAACGTCACACTATTGAACGTGGAAGGAACATTCAAAATATTCTAGACCAATATTGCAGATTTGTAAAACCTAGTTTTGAAGATTTTGTActtccaacaaaaaaatatgctGATATTATCATCCCTGGTGGAGGAGATAATGATGTTGCCACTGACTTGATCATGCAAAATATCCGTACAAAGCTTGGTCAACATGTTTTGTGTAAAATATAtccaaatatttttatcattttttctacATTTCAGATAAAGGGAATGCATACTCTCATTCGGGATGTTGGAACTACAAAgcatgattttgttttttattcagATCGTCTTATTAGACTGGTTGTTGAACATGGACTTGGTCACCTTCCTTTTACAGAAAAGCAAGTCACAACACCAACAGGATCTGTATATTCTGGTGTGGTTTTCTGTAGCAGGCTATGTGGAGTGTCAATTATTAGAAGTGGAGAAAGCATGGAGAATGCATTAAGAGCATGTTGTAAAGGAATCAAAATTGGTAAAATTCTTATTCATGGACATGGCACAAATGGTAGACAGTTAATATATGAGAAGCTACCATCAGATATTGCAAGTCGTCATGTTTTGCTACTTGATCCTGTTCTAGCCACAGGAAATTCTGCGATAAAAGCTATCTCTCTGCTTTTGACGAAAGGCGTACCAGAATCCAACATAATCTTTCTAAATTTAATTGCATCACCACAGGGAATAAATGCAGTTTTTGAGAGATTTCCAATGATAAAACTTGTCACATCAGAGATTGATGCAACACTAAATGAGAATTCTCGTGTGATCCCTGGCTTAGGAGAGTTTGGTGATCGTTACTTTGCCACAGATGATTAG 2475 0.3648 MTTIGMLMALAAINNWPLFQLDVNTTFLHGDLNEEVYMKPPPSLSLPHLDMSKVDYSLFTKHSSIGFTIILVYVDDLVLGGTDMAEIQNIKLLLDTKFSIKDLGSLKYFLGFEVTRSKTSISLCQRKYTLDIFEDTCLLGAKPCFSLMQPHLQLSKDSGTILSDPTAYRRLVGRLLYLTHSRPEIAYAVNKPSQFLSAPTTDMLAGLHVLKYLKNNLGKGLLFSSILLLASRVFLILIGVFVQIQGGQQLVIASLLVIPLSVGKSALHIAVNPVFHERTKHIEIDCHVIRDKVQAGILHILQLAPNIKLQIFSPNPFIQAHSIVFKASLDCWISNSALGRVLKLVMSHSLREGVETSDESLTCDTSKTIEMKNSGKEIGLNVDINNKLSLQSNASKGPPSPKQPFLIGVAGGTASGKTTVCNLINTQLHDQRIVLINQDSFYHSLSDKILQKVNDYNFDHPDAFDTELMLSSLEKLKQGQAVNIPNYDINSGMRVEPPRQVHSADIIVLEGILVLHDPRVRDLLNMKIFVDEDSDIRLARRIQRHTIERGRNIQNILDQYCRFVKPSFEDFVLPTKKYADIIIPGGGDNDVATDLIMQNIRTKLGQHVLCKIYPNIFIIFSTFQIKGMHTLIRDVGTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVTTPTGSVYSGVVFCSRLCGVSIIRSGESMENALRACCKGIKIGKILIHGHGTNGRQLIYEKLPSDIASRHVLLLDPVLATGNSAIKAISLLLTKGVPESNIIFLNLIASPQGINAVFERFPMIKLVTSEIDATLNENSRVIPGLGEFGDRYFATDD 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02471 824 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 397 596 IPR027417 -
Tsu06g02471 824 Pfam Uracil phosphoribosyltransferase 621 822 - -
Tsu06g02471 824 Pfam Phosphoribulokinase / Uridine kinase family 406 592 IPR006083 GO:0005524|GO:0016301
Tsu06g02471 824 SUPERFAMILY PRTase-like 606 822 IPR029057 -
Tsu06g02471 824 SUPERFAMILY DNA/RNA polymerases 13 213 IPR043502 -
Tsu06g02471 824 TIGRFAM udk: uridine kinase 404 603 IPR000764 -
Tsu06g02471 824 PRINTS Uridine kinase signature 434 445 - -
Tsu06g02471 824 PRINTS Uridine kinase signature 571 584 - -
Tsu06g02471 824 PRINTS Uridine kinase signature 479 494 - -
Tsu06g02471 824 PRINTS Uridine kinase signature 404 421 - -
Tsu06g02471 824 PRINTS Uridine kinase signature 535 545 - -
Tsu06g02471 824 PRINTS Uridine kinase signature 549 560 - -
Tsu06g02471 824 CDD PRTases_typeI 685 795 IPR000836 -
Tsu06g02471 824 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 52 145 IPR013103 -
Tsu06g02471 824 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 3 44 IPR013103 -
Tsu06g02471 824 Gene3D - 608 822 IPR029057 -
Tsu06g02471 824 CDD UMPK 406 603 IPR000764 -
Tsu06g02471 824 CDD RNase_HI_RT_Ty1 264 300 - -
Tsu06g02471 824 PANTHER URIDINE KINASE 366 820 - -
Tsu06g02471 824 PANTHER URIDINE KINASE-LIKE PROTEIN 5 366 820 - -
Tsu06g02471 824 Gene3D - 400 607 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02471 Tsu-Chr6 31742075 31753880 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02471 403 824 PRT Gene Family AT1G55810 73.522 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02471 K00876 - csin:114323087 687.952