Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02464 atgggTCGTGGAAGAATATCTATGACACTTATTCAAAAGGAGAAATCAAGAAGGACAACTTTTCAAAAGCGAAAGAATGGATTAATCAAAAAAGTGAATGAATTTTCCATTCTTTGTGATGTTGATGTTTGTGTAATTCTCTATGCTCCCAATTTTGATGGTCAGGGATATATTGGACCTGAAATATGGCCTAAAGACACAAGTGAAGTAAGAAGAATCCTTCAAAAGTACTATAACACAACGATTGATAGGCCTCCTAAGATCTATGATGTTCAAGAGTATTACAAAGAAAGGATGAAAAAGGTCGAATTCGAGATTTCCAAAGTGCGCAAAGAATTGTTAAAGGTCATGTATCCAACTTGGGATGAATCTTTCAATTCTCTTGGAGAGGATCAAATGAGGTTATTTGCTGGCATATTGGATGCTAAGCTTGATGCTTGTAATCAAAAGATGAATATGCTAAAAGGAGATTTTAAGGGAAAAACAATAGCTCATGAATCACACAAGGTTGCCAAACCTAATACTCCCTATTTGACCTCAAATTCAAATAACTACTTCAATCTCATGCAAAACATGTCTCAACCACAAATTTACCATCCATTGATGAATATTAGTGATAAAAAACCCTTAGGGTTTTGGCCACTTCACTTCGGACAAAGCTCTCAACCTTCTCCGACGCCTTCTAGTGCGCAAGGTTTTTATCAGGTGCAGTCTGATGAGGGTAGATATGCACAATCTTATCTTTGCAAGCAAGTCAGTGCTAATTCGACTAATTGGAGCAATCACATTGATGCTAATATTTCCTATGATCCAAAAACTGGtacaaaaaagaagaatgtcCCTGAAAATGATGAGAATTTGTCACCATATTATTACAATCCAAATGCAATGACAATGCAATCATATCCTATTGGTATGCATACTCTTCCTTTTGAGAATCTTCCAAACCTACCACCACATGGATATCAACTTAATGGATTCTATGATATGGATATTCTTCAAGCTCATATGTTCAACAACTACATGAATGGAAGGAAGTAG 1041 0.3516 MGRGRISMTLIQKEKSRRTTFQKRKNGLIKKVNEFSILCDVDVCVILYAPNFDGQGYIGPEIWPKDTSEVRRILQKYYNTTIDRPPKIYDVQEYYKERMKKVEFEISKVRKELLKVMYPTWDESFNSLGEDQMRLFAGILDAKLDACNQKMNMLKGDFKGKTIAHESHKVAKPNTPYLTSNSNNYFNLMQNMSQPQIYHPLMNISDKKPLGFWPLHFGQSSQPSPTPSSAQGFYQVQSDEGRYAQSYLCKQVSANSTNWSNHIDANISYDPKTGTKKKNVPENDENLSPYYYNPNAMTMQSYPIGMHTLPFENLPNLPPHGYQLNGFYDMDILQAHMFNNYMNGRK 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02464 346 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 3 230 - -
Tsu06g02464 346 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Tsu06g02464 346 Gene3D - 13 103 IPR036879 GO:0003677|GO:0046983
Tsu06g02464 346 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tsu06g02464 346 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu06g02464 346 CDD MADS_SRF_like 2 78 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tsu06g02464 346 SUPERFAMILY SRF-like 2 99 IPR036879 GO:0003677|GO:0046983
Tsu06g02464 346 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu06g02464 346 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tsu06g02464 346 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tsu06g02464 346 PANTHER MADS BOX PROTEIN 3 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02464 Tsu-Chr6 31584895 31585935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02464 1 149 Type I MADS-box Gene Family AT5G55690 41.060 4.26e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu06g02464 SRF-TF 2.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02464 - - mtr:MTR_1g114730 461.84